Bombyx mandarina (wild silkworm): 114249038
Help
Entry
114249038 CDS
T05882
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
bman
Bombyx mandarina (wild silkworm)
Pathway
bman03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bman00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
114249038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bman03019
]
114249038
03036 Chromosome and associated proteins [BR:
bman03036
]
114249038
Messenger RNA biogenesis [BR:
bman03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
114249038
Chromosome and associated proteins [BR:
bman03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
114249038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nucleoporin2
Nup96
Nup98_GLEBS
TPR_Sec16
Motif
Other DBs
NCBI-GeneID:
114249038
NCBI-ProteinID:
XP_028038292
UniProt:
A0A6J2K8K5
LinkDB
All DBs
Position
Unknown
AA seq
1827 aa
AA seq
DB search
MFPKQTFGSNATSGFGSFNSGATTSSPFGGFKPATGSFGASTSTQPATGGGLFANNTSGG
GLFGNPGPSTSTSAFGTSTTGFGFGGGATSGGLFGNTSTAGGGLFGNTQATPSFGVKPTG
FGFSGSTTTGATTGNLFGTPATGPGAGLFAPQGNTMSGGGLFGGNTSAGAFGQQQPTGTG
HVKFNPVVGTEVVMKNGTSQNINIKHHCITFMKEYEGKSLEELRLEDYMAGRKGSTATTG
MFGGFQQTTENKPLFGSTGFGQPATTSAPGMFGTGSGLGTSGAFGQNSTFSFGGNTNTTT
TGLFGANKPPAFGTSTAGSTLFNTTTTQAPAFGASTNTFGFGANTQNQSTGIFGAKPATG
AFGTTPASSGFGSFSGGGAPFAAKTTAPAFGTTTSAFGSMAPTFGSGTQGGGLFGQGTAF
GKPATTQPSFSFAASQPAAPGLGAGAGGVFQGKPAAPSFGTLGLGTFQQQPANTFKTGPV
ADGVLGGGMFGNNNALGSGFGLGSMNANNSLLANNSLSGASAGGNVHEQILTMAARPYGD
SPLFKDLLPDSTTAAEDILKPTNPLALKAVLDGSHSAYRINSPTSRVQPRQLPIHKKSLF
DGLEESDSSLEDKLCLKPSRKRLVLRARPADGQDEGRTNRSFEQPSSGPGRTQDSVDQVD
RSANVNRNKSTADTEENGDLHPDKHSRWINSPKISDLWTERDHKPDAQRTNRMYPDIEKE
VSEHISERRASWLSTKPLRAGAARGAVGCAESSVRELGGRSASPERDRLDSLSVSEDENV
EPRDAPPHPTGVKLTRPGYYTIPSLDDMINYMRPDGTCPVPHLTIGRKNYGNVYYDSEID
VAGLDLDALVHFLNKEVIVYPEDSDKPPVGVGLNRRAIVTLDRVWPRDKTEKRLITEPDR
LLKLDYEGKLRRVCEKHDTKFIEYRPQTGSWVFRVEHFSKYGLTDSDEEDDPTPDVLKRQ
LLTESLQKASAPGPKSPVSVSEAGAAVPGLVGPGHPGLGGSGPPGLLSEDSLYNLHHTSL
LTLNGTSKAFDVMDTAEDNAESQSLFLENRAFGVKSPTSELARLENRRSHSVQLMKASLY
PDEEMDDDVSVSTGEQLVPNSAPIFNDQRLPSPSLGTVVGAPPAPPERAPEPPMRPLTVQ
PHTIVLKYHRKVPPFKDTIAGRLDGACLADMSVSRARHSRVGFGPASTVALLTTYDAFSD
LPRSSELSSLDRYLSGRASGDWSERLVARLALAADRPQHPLQEILEPHISTLLEWSTLSE
CGEDECPRLSLRPEPEARLAVLRDNLRHSSKHDYVVKFGVSAAYCREVWKLCDALWGADL
ENGGIPGTDEQSIVNRHKKLLRWFEDAVAGVTDAELAEPRGAELEDESDTHSARIWTLLL
GGRTLEACKLARESGDLNMAMLLAQAGGDVAYRGLVARQLAQWSACGADTHVAGARLHAL
RALGGAAPPALAGAGWLRALHATARYICPQIPSLEKIIRTYEGFFSKDEQVDLTSLGDDV
DMRPPLPDYNEDYCYITSKNGNTKAVLDLRYELIRARAFNQRPKLKPAAYTPDPNDFTLC
FLLGAWFGSPAVESVVSVAEQLEAGGAWQLATAVLAYHPHGAARSSLVRSMISRHAPSSG
SAPGLQLLERIGVPEKWIHLARAHRAKYEHQPALEVEHLLAARQWSAAHRVLLDELLPDA
VLNDDLQTVSRLLKTLEQAAERHEVADWESGGLALSHYIHVCDEIMAIQNEGDQWGRLEA
LRPRLAAACRALPPPQHMSPRVAAARAQMGGRLLRLTLSANLSADKLASLVAALKLPPDC
SACASHKITTELAERRLEGNYTALLAP
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atgtttcccaaacagacttttggcagtaatgccacttcaggttttggttccttcaattct
ggcgcgacaacttcgtccccttttggcggattcaaacctgccacaggatcttttggtgcg
agcacgtcaacgcagcccgccactggtggaggtctcttcgcgaacaatacctctggtggt
ggtcttttcgggaatcccggtccctcgacatcgacttccgccttcgggacgagcaccact
ggtttcggcttcggcggaggtgctacgtccggtggactattcgggaatacctcgaccgct
ggagggggtttgttcgggaacacgcaggcgacaccctcgtttggagtgaaaccgacaggt
ttcggcttcagcggctcgaccacgaccggagcgaccaccgggaacctgttcggcacgccg
gcgaccggacccggcgccggactgttcgcgccccagggcaacaccatgtccggcggggga
ctgttcggggggaacaccagcgctggtgctttcggtcagcagcaacccacagggaccggc
catgtcaagttcaacccagtggtcgggacggaggtggtgatgaaaaatggcacatcacag
aacattaacatcaaacatcactgcataactttcatgaaggaatatgaaggcaaaagcttg
gaggagctacgtttggaagattacatggcagggcggaagggctcgacagccaccacgggg
atgttcggaggcttccagcagacgacagagaacaaacccttgttcggcagcaccggtttc
ggtcagccagccaccacgagcgcccccggcatgttcgggacaggatcgggcctggggacg
tccggggcattcggacagaacagtacattctcgtttggcggcaacacgaatacgacgacc
acgggcctcttcggcgcaaacaagccgccggctttcggtaccagcactgcgggatccact
cttttcaatacaacgacgacacaagcgccggcgttcggcgccagtactaacacattcggg
tttggcgccaacacgcagaatcagtcgactggtatattcggggcgaagccggcaaccgga
gcgttcggtacgacgccggccagctcgggcttcggttcgttctcggggggcggagcaccc
ttcgctgccaagacgacggctccggcgttcggtaccaccacatccgcattcggcagcatg
gcgcctacgttcggcagcggcacgcagggcgggggcctgttcgggcagggcacggccttc
gggaagccggccaccacgcagcccagcttcagcttcgccgcctcgcagcccgccgcgccg
gggctgggggccggggcggggggcgtgttccagggcaagcccgcggcgccgagcttcggc
acgctcgggctcggcacgttccagcagcagcccgccaacacgttcaagacggggccggtt
gcagacggcgtgctgggcggcggaatgttcgggaacaacaacgcgctgggctccggcttc
ggtttgggctcgatgaacgcgaacaacagtctgctggcgaacaacagcttatccggcgcg
tctgctggcggcaacgtgcacgagcagatcctgacgatggcggcccgcccgtacggggac
tcgcccctcttcaaggacctgctgcccgattcgacaacggcagccgaagacatactgaag
ccgacgaacccgctggcgctgaaggcggtcctggacggctcccattccgcctacaggatc
aactcgcccacctcacgggtgcaacccaggcagctgccgatacataagaagtcgctcttc
gacggcctagaagaatcggattcgagcttagaagacaagctgtgcttgaagccgagccgc
aagcgtctggtgctgcgcgcccgccccgccgacggacaggacgagggacgtaccaacaga
tcattcgagcaaccctccagtgggccgggccgcacgcaggactccgtcgaccaagtggac
aggtccgccaacgttaaccgtaacaagtccacggccgacacagaggagaatggcgattta
catccagacaagcacagcaggtggatcaactcgccaaagatcagcgatctgtggacggag
cgggatcacaagcccgacgcgcagcggaccaacaggatgtaccccgacattgaaaaagaa
gtatccgaacatatatccgagagacgcgccagctggctgagcacgaaaccgctgcgtgcg
ggggcggcgcgcggggccgtggggtgcgcggagagctcagtgcgggagctggggggacgg
agcgcctcgccggagcgggaccggctcgactcgctatccgtatctgaagatgagaatgtg
gagccgcgcgacgccccgccccacccgaccggggtcaagctgacgaggccgggctactat
accatcccctccttggacgacatgataaactacatgcggccggacggcacgtgtccagtt
ccgcacctgacgatcggacgtaagaactacgggaacgtgtactacgactcggagatcgac
gtggccggcctcgacctggacgccctggtccacttcctgaacaaggaggtgatagtctac
ccggaggacagcgacaagccgccggtgggagtcggcctgaaccggcgggccatcgtgact
ctggaccgggtgtggccccgggacaagaccgagaagcgactcatcaccgagcccgacaga
ttactaaaactggattatgaagggaagctgcgcagggtttgcgagaagcacgacaccaag
tttatcgagtatcgacctcaaacgggcagctgggtgttcagggtggagcatttcagtaaa
tacggtctcactgattccgacgaggaggacgaccccactccggacgtcctgaagcggcaa
ctcctcaccgagtcgctacagaaggccagcgcaccaggtcccaagtcccctgtgagtgtg
tcggaggcgggggctgcggtcccggggctcgtggggccgggacatcccgggctggggggt
tccggcccgccaggcctgctcagcgaggacagcctctataatctccaccacacttcctta
ctgaccctgaacggcaccagcaaagctttcgatgttatggacaccgctgaagacaacgcg
gagtcacaaagcctgtttctagaaaacagagcgttcggcgtgaagagtcccacctcggag
ctggcgcgcctggagaatagacgcagccacagcgtacagctgatgaaggcctcgctgtac
cctgatgaagaaatggacgatgacgtgtcagtgtcgacgggagaacagctggtgccgaac
tcggctccgatatttaacgatcaacggttaccgtcgccttcgctggggaccgtcgtgggg
gccccgcccgcgccgccggagcgcgcgcccgaaccaccaatgcgaccgctcactgtccaa
ccccatacgatagtattgaaataccacagaaaggttccaccattcaaagacaccattgcg
ggtcggctggacggcgcctgtctggccgacatgtcggtgagccgcgcgcgccacagccgc
gtcggcttcgggcccgcctccaccgtcgccctcctcaccacgtacgacgccttcagcgac
ctgcccagatcgtctgagctctcgtcgttagaccggtacttgagcggcagggccagcggc
gactggtcggagcgtctggtggcgcgtctggcgctagccgccgaccggccgcaacacccg
ctgcaggagatcttggagccgcacatctcgacgctgctggagtggtccacgctgtcggag
tgcggagaggacgagtgcccgcgcctctccctccgccccgagccggaggcgcgcctggct
gtgctcagggacaacctgagacactcctccaagcacgactacgtagtgaagttcggcgtg
tctgccgcgtactgccgcgaggtgtggaagctgtgcgatgcgctgtggggagccgatctg
gagaacggtggcatccctggcacggacgagcagtcgatagtgaacagacacaagaagctg
ctgcgttggttcgaggacgccgtggcgggggtcacggacgcggagctggccgagccccgg
ggggcagagctggaggatgagtccgacacgcacagcgctcgaatctggacgttgctgctg
ggcggcaggacgcttgaggcctgcaagctggccagggagagcggggatctcaacatggcc
atgctcctcgctcaggccggcggtgacgtggcgtaccgcgggctggtggcgcggcagctg
gcgcagtggagcgcgtgcggcgccgacacgcacgtggcgggcgcgcgcctgcacgcgctg
cgggcgctgggcggcgccgccccccccgcgctggcgggcgccggctggctgcgcgcgctg
cacgccacggccagatacatttgcccgcaaattccctcgctcgagaaaattataagaacg
tacgagggattcttcagtaaggacgagcaagtcgatttgacctcattaggcgatgacgtc
gacatgagaccgcccctgccggattacaatgaagattactgctacatcacgagtaagaat
ggaaatacgaaagcggtgttggacttacgctacgagcttattagagcaagagctttcaat
caacgtccgaaacttaagcccgcagcttacactccggatccgaacgattttacactgtgc
ttcctcctgggcgcgtggttcggcagtccggcggtggagagcgtggtgtcggtggcggag
cagctggaggcgggtggcgcgtggcagctggccaccgccgtgctggcgtaccatccgcac
ggagccgcccgatcctcgctggtgaggagcatgatctcgcggcacgcgccgtcctcgggc
tccgcccccggcctccagctgctggagcggatcggggtgcccgagaaatggatccacctg
gctcgcgcgcacagggccaagtacgagcaccagccggcgctggaggtggagcacctattg
gcggcgcggcagtggagcgccgcgcaccgcgtgctgctggacgagctgctccccgacgcc
gtgctcaacgacgatctgcaaactgtatcccggctgctgaagacgctggagcaggcggcc
gagcgacacgaggtggccgactgggagagcggcgggctcgcgctgtcccactacatacac
gtctgcgacgagataatggcgatacagaatgaaggcgatcagtgggggcggctggaggcg
cttcgcccccgcctggccgccgcctgtagggcgctgccccctccacaacacatgtcgccg
cgtgtggccgcggcccgagcgcagatggggggtcgcttgctgcggctgacgctgtccgcc
aacctgtccgccgacaagctggcgtcgctggtggccgccctgaagctgcccccggactgc
tccgcctgcgccagtcacaagataacaacagaactcgccgaacgcagattagaagggaat
tatacggccctgctagcaccttaa
DBGET
integrated database retrieval system
