Bombyx mandarina (wild silkworm): 114249231
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Entry
114249231 CDS
T05882
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bman
Bombyx mandarina (wild silkworm)
Pathway
bman03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bman00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114249231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bman03019
]
114249231
Enzymes [BR:
bman01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114249231
Messenger RNA biogenesis [BR:
bman03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114249231
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
RNA_bind
Motif
Other DBs
NCBI-GeneID:
114249231
NCBI-ProteinID:
XP_028038523
UniProt:
A0A6J2KA60
LinkDB
All DBs
Position
Unknown
AA seq
532 aa
AA seq
DB search
MDITKENFYEELDNIAKNIKDSCFISFDAEFSAILTRESFKYSLFDTNEERYNKYKTQIS
TMKMMQVGLTMFQYDRELDAYLATGYTFHLCPQLIGRINQSLIFQASTLKFLCKHNFDFN
KFIYEGLPYLSKSDEALLNRYRIENNLFDYVSESLEFDEEKQINQCSSEVSKWLSSSVED
TMYLDIDNAICRYLLHLELRQRYPGILTTDSLGNSKKILIYRDKNVEGAKNAPIAILEDN
LIAYLLGFLHVIKLLETHKKPIVGHNMFLDMLFLHNQFIGPLPDSYTMFKKNINSVFPTI
FDTKYISHAMSKKLTFSESWKSNALQDLYEFFAERKCKKLEYGINIVRLTTPFDVKQSYH
EAGWDAYCSGYCFIRLGHWAACENRGKPHVIGPREKLAALAPYCNKVNVIRGGVSYMNFS
ENDPPRNRPVLLHVKCLKDTVIDVEKVASLLGSFGSIDIKPCGKRAALVATGAQFMVDKI
LKTYENNRDYRISKYSVYKHSVACRFAIWSGSIVTGGLALYLIHKKFKSILL
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggatatcaccaaagaaaacttttatgaagaacttgataacatagcaaaaaatataaaa
gactcgtgttttataagttttgatgcagagttttcagctatacttaccagagaatcgttc
aaatacagcttgttcgacacaaatgaagaaagatacaataagtacaaaacacaaataagc
acaatgaaaatgatgcaagtaggactgactatgtttcaatatgatagagaattagatgca
taccttgcaactggatatacatttcatttgtgtccacaactaattggaaggataaatcag
tcgctcatatttcaagcctcaaccctcaagtttttatgtaaacacaatttcgatttcaat
aagttcatctatgaaggccttccatatcttagcaagagtgatgaggcattgttaaacaga
tacagaatagaaaacaacctgtttgactatgtcagtgagtctcttgaatttgatgaagag
aagcaaatcaaccaatgttcttcagaagtttcaaaatggttgtcatcgagtgtagaggac
acaatgtacttagatattgacaatgctatttgccggtacttgctgcacttagagctaaga
caacgttatcctggtatcctgactacagatagcttaggtaatagcaagaagattctcata
tacagagacaaaaatgtcgaaggagccaaaaatgcaccaatagcaatactggaagataac
ttaatagcctatttactgggcttcttgcacgtaataaaactgctagaaacacacaagaag
cccattgtaggacacaacatgtttttggatatgttgttccttcacaatcaattcatagga
ccactaccggatagttatacaatgtttaaaaagaacattaacagtgtatttccaactata
tttgatactaaatatatatcgcatgctatgagtaagaaactcactttttctgagtcttgg
aaatctaatgcattacaagatttgtatgaattcttcgctgaaagaaaatgtaagaaactt
gaatatggaatcaacattgtacgactgacaacaccgtttgatgttaaacaaagctatcat
gaagccggatgggacgcttactgttcaggttattgctttatacggctcggtcactgggcc
gcctgcgagaaccgcggcaagcctcacgtgatcggacccagggagaaactcgcagcccta
gcgccttactgcaacaaggtcaatgttataagaggtggcgtttcttatatgaatttctca
gaaaacgatccacctcggaacagacctgtcttgttgcacgttaaatgtctaaaagacacc
gtcatagacgttgaaaaggtggcgtcgctactgggcagcttcggctcgatcgacattaag
ccctgtggcaagcgagccgccttggtagcgaccggcgcacagtttatggtagacaaaatt
ctgaaaacctatgaaaacaacagagattatagaatttcgaaatacagtgtatacaagcat
tcagttgcatgtcgcttcgctatctggagcggctcgattgtaacaggcggcctggcgtta
tacttaattcataagaaatttaaatctattttgttataa
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