KEGG   Bombyx mandarina (wild silkworm): 114249923
Entry
114249923         CDS       T05882                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
bman  Bombyx mandarina (wild silkworm)
Pathway
bman03030  DNA replication
bman03410  Base excision repair
bman03420  Nucleotide excision repair
bman03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bman00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    114249923
   03410 Base excision repair
    114249923
   03420 Nucleotide excision repair
    114249923
   03430 Mismatch repair
    114249923
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bman03032]
    114249923
   03036 Chromosome and associated proteins [BR:bman03036]
    114249923
   03400 DNA repair and recombination proteins [BR:bman03400]
    114249923
DNA replication proteins [BR:bman03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    114249923
  DNA Replication Termination Factors
   ELG1-RFC complex
    114249923
Chromosome and associated proteins [BR:bman03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    114249923
DNA repair and recombination proteins [BR:bman03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     114249923
  Check point factors
   HRAD17(Rad24)-RFC complex
    114249923
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_14 AAA_22 RuvB_N AAA_11 DUF815 AAA_assoc_2 AAA_16 RCF1-5-like_lid AAA_5 AAA_7 AAA_30 DEAD PhoH ResIII AAA_19 AAA_24 Mg_chelatase bpMoxR Sigma54_activ_2 AAA_3 LisH_TPL
Other DBs
NCBI-GeneID: 114249923
NCBI-ProteinID: XP_028039441
UniProt: A0A6J2KAX5
LinkDB
Position
Unknown
AA seq 334 aa
MTVGETGQNLPWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTI
LACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFASTRTIFKAGPKLIILDEADAM
TNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIVPRLQEIV
TTEGVKMSEGGMKALLTLSGGDMRKVLNTLQSTWLAYRDVTEDNVYTCVGHPLRADIDSI
LNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRVKLPPEVLVSLLIKMSDAE
ARLASGSSERVELAALIASFQIARDQVKLDTEVS
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgactgttggggaaacaggccagaatttgccatgggttgaaaaatatcgcccaaaaaga
ttggatgatttagtatctcatgatgatataataaaaacaataaatcaatttatgaaagag
aatcagctcccacatctactattctacggtcctcctggaaccgggaagacatctaccatt
ctagcctgtgccaaacaaatgtacactccacagcaatttagttcgatggtgttggaactt
aatgcttctgacgatagaggcattggcattgttagaggtcagatactcagttttgcctca
acaaggactatatttaaagcaggacctaaattaattatacttgatgaagctgatgctatg
acaaatgacgctcagaatgcactaaggagaattatagagaagtacaccgagaatgtaagg
ttttgcataatatgcaactacctgggtaaaattattccagcattacagtcgcggtgtacg
cgatttcgttttgcccctctcaagcaagatcaaattgtgccgagattacaagaaattgtc
acaacggaaggtgtaaaaatgtcagagggcggaatgaaggcgcttctcaccttgtccggg
ggtgatatgagaaaggttttgaatacgcttcaaagcacgtggctggcgtatcgtgacgtc
accgaagataatgtttacacttgcgtcggccaccccctccgcgccgatatcgacagcata
ctcaattggttgctaaacgaaaatgatttttccgcctgctttaaatccatacaagacttg
aagattgcaaaaggattagcactgagcgatatattggctgaagtccatactatcatacag
agagtgaaactgcctccagaagtattagtgtcattgctcataaagatgtcagacgctgaa
gcgaggttggcgagcggaagcagcgagcgggttgaacttgccgcgctcatcgcgagcttc
cagatcgctagggatcaagtcaaactagacacagaagtttcgtag

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