Bombyx mandarina (wild silkworm): 114251435
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Entry
114251435 CDS
T05882
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
bman
Bombyx mandarina (wild silkworm)
Pathway
bman03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bman00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114251435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bman03019
]
114251435
Messenger RNA biogenesis [BR:
bman03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
114251435
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_IFT140_1st
ASA1
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_2nd
DSE1_N
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
CFAP251_N
Beta-prop_EIPR1
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_Vps41
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_NOL10_N
Beta-prop_DCAF4
Beta-prop_HPS5
PEP5_VPS11_N
Tricorn_2nd
Beta-prop_WDR11_2nd
Beta-prop_WDR41
Beta-prop_ACSF4
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
114251435
NCBI-ProteinID:
XP_028041485
UniProt:
A0A6J2KHH6
LinkDB
All DBs
Position
Unknown
AA seq
879 aa
AA seq
DB search
MDFGHPHQNMGMPPPGMGMMGPPMGPPPGRNNIRHNFRPFNYQMRFPPQGPLNMTQDDFD
GKRLRKSVMRKTVDYNAAIIKALECRVWQRDWRDRHALQPDAMYTPDLLPPPSYPDNPIN
AVTTRFVKTATNKMRCPIFAVAWTPEGRRLITGASSGEFTLWNGLTFNFETILQAHDSPV
RSMVWSHGEGWMVTGDHSGFIKYWQSNMNNVKMYQAHKEAVRGISFSPSDSKIVTCSDDG
TLRIFDFYRCQEERILRGHGADVKCVQWHPTKALIVSGSKDNQQPIKLWDPKSGTALSTL
HAHKSTVMDLKWNDNGNWLITASRDHLLKLFDIRKLGSELQIFRGHKKEASSVAWHPHHE
GLFCSGGSDGAILFWNVGTDKEVGCIEGAHESIVWTMAWHPLGHILCSGSNDHTSKFWTR
NRPGDLMRDKYNLNTLPPGVQDDQDLEEPTTIPGMGPEDKVEIFSSDTDKVIPGLDLDTT
FVPMEFEKKVKKVPYSKPIPRNFQAQWNHAPSAEESSTEVLSQALVESVPGSIPLEHINP
SAIFIYGKLIGVEPGSKLEKAITEGHVSLRKYIASGELEELHDVMPHLEDDADEENFQPF
EYPDQNENENGDEDEQNNKEDYERDEEYYDNDMDKNGTHDSEKTAKYNNGPDMSNMQQVT
NMPLVMNNMMRPPMGMGPIRPPMRPPLGSMHMPPPHMSGMPPMGAMPPLGNMPPMGNLPP
RGSMPPMGNMPPMGNMPPMGNMPPMGNMPPMGVMPPLGNLPPRSSFNDNGYNKSQFDSNY
ENQQYSQNDEEYNEEESYDQNYEEESNYNEDEKGDEGFSRNQRWEHGYRGRTRVRGRGMN
GYGGRGNRRGNNGSRGSPRNRRGGGHNRNFRRGSKSVSN
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atggatttcggacatcctcaccagaacatgggtatgcccccgccgggcatgggtatgatg
ggtccacccatgggcccgccaccggggcggaacaacattcgccataactttagacctttc
aactaccagatgcgatttccaccacagggccctcttaatatgacacaagatgatttcgac
ggtaaacgtttgcgtaaatcagtaatgcgtaaaactgtagattataacgcggctattata
aaagcattagaatgccgcgtttggcaaagagactggcgcgatagacatgcgcttcaaccg
gacgctatgtacacccctgaccttttacctcctccttcatatcctgataatccaataaat
gccgttacaacacgttttgttaaaacagccactaataaaatgagatgtcctatctttgct
gtagcatggactcctgaaggtagaagattaataacaggtgcttcctcaggagaatttaca
ctatggaatggattaacatttaactttgaaaccattctccaagctcatgactcaccagta
agatcaatggtttggtcacatggagaaggctggatggtaactggagaccattcaggattt
ataaaatactggcagagtaatatgaataatgttaaaatgtatcaagctcataaagaagct
gtaagaggaatcagtttcagccctagtgattctaagatagtaacatgttcagatgatggt
acgctcaggatatttgatttctatagatgtcaagaagaaagaatattgagaggtcatggt
gccgatgtgaaatgtgttcaatggcatccaactaaagcacttattgtatcaggcagtaaa
gacaaccaacagcctattaaattatgggatccaaaatcagggacagcattgtcaactctt
catgctcataaatctacagtaatggacttaaagtggaatgataatggtaactggctaata
actgcatcccgtgatcatttacttaaattatttgacatacgtaagctagggtctgaactg
caaatttttagaggacacaaaaaggaagcttccagtgtggcatggcatccacatcatgaa
ggcttattttgttctgggggatctgatggagctattttattttggaatgtaggtactgat
aaagaagtcggttgtattgaaggagcacatgaatctattgtctggacaatggcttggcat
ccactgggtcatatattgtgctcaggttcaaatgaccatacttctaaattttggactcgg
aaccgtccaggtgaccttatgagagacaaatataatttgaataccttacctcccggagtt
caagatgatcaagacttggaagaacctactacaattcctggtatgggacctgaagataaa
gtagaaatattttcctctgatacagataaagttattcctgggttagatttagatactaca
tttgttcctatggaatttgagaagaaagttaaaaaagttccatatagtaaacctattcct
cgaaacttccaagcccaatggaatcatgcccctagtgctgaagaatcttctacagaagtc
ctgagccaggctctagttgaatcagtcccaggctccataccacttgaacacatcaatcca
tccgccatattcatttatggaaaattaattggagtagaacctgggtctaaacttgagaaa
gcaataaccgaaggacatgtttctcttagaaaatatatagctagtggggaactagaagag
ttgcatgatgttatgcctcatttagaagatgatgccgatgaagaaaactttcaaccattt
gaataccctgaccaaaatgaaaatgaaaatggtgatgaagatgaacaaaataacaaagaa
gattatgaacgagatgaagaatactatgataatgatatggataaaaatggaacccatgat
tcagaaaaaactgcaaaatataataatggcccagatatgtctaacatgcaacaggtgact
aatatgccactagttatgaataacatgatgagaccccctatgggtatgggaccaattaga
ccccctatgagaccaccccttggttctatgcacatgcctcctccacacatgtcaggcatg
ccacccatgggtgctatgccacccttaggaaatatgcctccaatgggaaatttgccacca
agaggtagtatgccaccaatgggaaatatgcctccaatgggaaatatgcccccaatggga
aatatgcccccaatgggtaacatgccaccaatgggagtcatgccacccttgggaaacttg
ccaccacggtcttcctttaatgacaatggttacaataaatctcagtttgattctaattat
gaaaatcagcaatattcacaaaatgatgaagaatataatgaggaagaatcttatgatcaa
aattatgaagaagaaagtaattacaatgaagacgagaaaggtgatgaaggattttctaga
aatcagcgatgggagcatggttataggggaaggactcgtgttagaggtagaggtatgaat
ggttatggaggacgtggtaatcgacgcggcaacaatggctccagaggatcaccacgaaat
cgacgaggtggtggtcataacagaaactttagacgaggcagtaaatccgtttcaaattag
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integrated database retrieval system
