Bombyx mandarina (wild silkworm): 114252012
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Entry
114252012 CDS
T05882
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
bman
Bombyx mandarina (wild silkworm)
Pathway
bman03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bman00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114252012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bman03019
]
114252012
03012 Translation factors [BR:
bman03012
]
114252012
Enzymes [BR:
bman01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
114252012
Messenger RNA biogenesis [BR:
bman03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
114252012
Translation factors [BR:
bman03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
114252012
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_N
OB_NTP_bind
HA2_C
nSTAND3
AAA_19
AAA_11
RsgA_GTPase
Cas3-like_C_2
AAA_22
NPHP3_N
ABC_tran
Motif
Other DBs
NCBI-GeneID:
114252012
NCBI-ProteinID:
XP_028042281
UniProt:
A0A6J2KIW8
LinkDB
All DBs
Position
Unknown
AA seq
1137 aa
AA seq
DB search
MLKKHLIFHGILNIFFKMPRRYNSFDRFDRPRPPKSGLRGKEIGMYYKALSIEKGKKNKK
NNVIRFKIPPSIVSSLYSNLASIEKLAKGLNICIKPIEKLTIAETPKGTIGLKPELSLHE
AMYMNTTAAENKNSVQARDNENLFEAKTPLTDFKKLEDISMISEDAELRSPSSVDNKSNG
IPVFGSIQKEIDDTAICSPDKKNKILETDNDVLMTPGSSKDFISVKDETVEIKLENRFLS
LRSSVNYKYGYEDIITGTFDEKLDECLARGININIKNEVNNDLSFAMIEEYNDMLSKDGY
KLHMKFRDKLPTYQKYEELLNMINNNQVLVISGETGCGKSTQVPQIILDDAIINKRGANV
KILVTQPRRIAASSLAMRVAEERNEKLGNSVGYAVRLEKVDPRPLGSIMFCTTGILLTEL
EVNQSLSNYSHIILDEVHERDTHIDLSMCMLKKVLNKRKDLKLILMSATINAEHLTSYFG
DCQRIHIEGIAYPVQDVYLEEILKMTGYKLPPAENKRADKRKTWQNHTKKAKATAASEME
KDIQYKAEIGPWLETIRSKIGWDVCTTLLDARIEDINIDLIVEVLKLISSKEPGAVLVFL
PGIGDITKLMSVMEQSCEFPRSKFDIYPLHSRLPSLEQHKIFQRPPTGIRKIIIATNIAE
TSITIDDIVYVIDCGKIKYSGLSIADNISTLKTEWISQANLRQRRGRAGRCQPGVCYHLV
TSFRAGKLEPSLKPEMQRSDLLEPVLAIKRLRLGKAADALKDMAAPPAEETIKAAVKHLQ
QCGALNESEILTPLGWHLARLPVHPAAGKLLLLGALFGCLDRAASVAAVWGFKDPFQLVI
GKEKQMDLAKKELALGEPSDHVAISEAIIQWEQCPRQHRNNFAYKNFLSMNTLKLLSEMK
HQLADNLRQMGFLNTGNIKSAWENRNANNLSLFKAIVAAALYPNIGSVRWTNLHNRNPRK
TPRIKVWTPEDGSIALHPSSVMANKHNGGLNAQPMCSSPGANWLVYWLKRRSTDLFLFDV
TLVYTLPLLFFGELHVSPAAEDPDDCIISIEKISVCCKKETTQLLFELRSLLDHVLADKI
MASSEHSVKNNAFEEQVLNAVIKLITAEDEGAEYLNSDDDNSESDHSEYETSRRWYR
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaaaaacatttaattttccacggaattttaaatattttttttaaaatgcctcgg
agatataattcttttgataggtttgataggccacgaccaccgaaatcgggtctaagaggc
aaagaaattggaatgtattataaagctttaagtattgaaaaaggaaagaaaaataagaaa
aacaatgtgatacgcttcaaaattccaccaagcattgtctcatcactgtatagtaattta
gcatcaatagaaaagcttgctaaaggactgaacatttgcataaaaccaatagaaaaattg
actattgcagaaacaccaaaaggtacaataggcttaaaacctgaactgtcattacatgaa
gccatgtacatgaacacgactgcagctgaaaacaaaaacagtgtgcaggcacgtgataat
gaaaatctatttgaagcaaaaacaccactaactgattttaaaaagctagaagatatttca
atgatatctgaagatgctgaattacgttcaccaagcagtgttgacaacaaatcaaatggt
atacctgtttttggaagtatccaaaaagaaatagatgatactgcaatatgttcaccagat
aaaaaaaacaaaattttggaaactgataatgatgttttaatgaccccagggtcatctaag
gattttatttcagtaaaggatgaaactgtggaaatcaaattagagaaccgttttttatca
cttagaagttcagttaactataaatatggctacgaagacatcataactgggacgtttgat
gaaaaattagatgaatgcttggcaagaggaatcaacattaatattaagaatgaagtaaat
aatgatctcagttttgcaatgatagaagaatacaatgatatgttgagcaaagatggttat
aaattgcacatgaaatttcgtgacaagctacctacataccaaaaatatgaagagctctta
aacatgatcaacaataatcaagttttggtcataagtggagaaacaggatgtggcaaatcg
acacaggtacctcaaataattctagatgatgccattattaacaaaagaggtgcaaatgtg
aagattctagtaactcaacccaggagaatcgcagcttcatcattagctatgagagtggct
gaagagagaaatgagaaactagggaatagtgtgggatatgctgttagattggagaaggtt
gatccaaggcctctaggaagcattatgttttgtaccacaggtatactactgactgaactt
gaagttaatcaaagtttgtctaactatagccatattatcctcgatgaagtgcatgaaagg
gacacacatatcgacttgtctatgtgtatgctaaaaaaggtactgaataagcgaaaagac
ttgaaactaatacttatgagtgccacaataaatgctgaacatctcacttcctactttggt
gactgtcaaagaatccacattgaaggtatagcatatcctgtccaagatgtttatttagaa
gagatattgaaaatgactggatataagttgccacccgctgaaaacaaaagagctgataag
agaaagacttggcaaaatcacacgaaaaaggctaaagctacggcagcctctgaaatggaa
aaagacatacaatataaagcagaaattggaccatggctagaaaccataagaagcaaaatc
ggttgggatgtatgtactacattattagatgcaaggatcgaagatattaatattgattta
attgtagaagttcttaaattaattagcagtaaagaacccggcgccgtcctggtgttttta
ccgggaatcggtgatataaccaagctcatgtccgtgatggagcagagttgcgaatttccg
agatcgaaattcgacatatatcctctacattcgcgactaccttctttggaacaacacaag
attttccaaagaccaccgaccggtatccgaaaaatcataatagctacgaatatagctgaa
acatcaattactatcgatgatattgtatacgtaatcgattgcggtaagattaaatacagc
ggactaagcatagcggacaacatctcgactttgaagactgagtggatatctcaggccaat
ttgcgacaaagacgaggccgcgccggtagatgccaacccggcgtctgttatcacctagtg
acatcgttccgagctgggaaactcgaaccgagcctaaagcctgagatgcagaggagcgac
ctactcgagcccgtgcttgccataaaacggcttcgactcggtaaagctgctgatgcttta
aaggatatggcggctccaccggcagaagaaactattaaagctgccgttaaacatttacaa
caatgtggagccctcaatgaatcagaaatcttaacacctcttggttggcatttggcacga
ctaccagttcaccctgcggctggtaaattattgctgttgggagcgctgttcggttgtttg
gaccgagccgccagcgttgccgccgtttggggcttcaaagacccttttcagttagttatt
ggaaaagaaaaacaaatggacctagccaaaaaggaattagccctaggtgagccaagtgac
cacgttgcgatatccgaggcgattatacaatgggaacaatgccccaggcaacatcgtaat
aatttcgcatacaaaaacttcctttctatgaatactctgaaattactctctgaaatgaag
catcagttggccgacaatttgaggcagatgggctttttgaatactggcaacatcaaatcg
gcttgggaaaatagaaatgctaataatctaagcctttttaaagctatagtcgctgcagcg
ctataccccaatattggttctgtgagatggacgaatcttcataaccgaaatccacgtaag
actccccgcatcaaggtttggactccggaagacggctcgatcgcgctgcaccccagcagc
gtcatggcgaacaaacacaacggcggcctcaacgctcagccgatgtgttcgagcccgggc
gctaactggctggtgtactggttgaagcggcgctcgaccgatttgttcttgtttgacgtc
actctggtctatactctgcctctgttgtttttcggtgaacttcacgtatctccagcagct
gaagacccagatgactgtatcatatcgatagaaaagatatctgtttgttgcaagaaggaa
actacacaattgctgtttgaattgcggtcgttattagaccacgttctagccgacaagatc
atggcgtcttctgaacactccgtaaaaaataatgcctttgaagaacaggttctgaatgca
gtgataaagcttattacagcagaggacgagggcgctgaatatttgaacagcgacgacgac
aattccgaatctgatcattcagaatacgaaacgagcaggaggtggtaccgttaa
DBGET
integrated database retrieval system
