Bombyx mandarina (wild silkworm): 114252822
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Entry
114252822 CDS
T05882
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bman
Bombyx mandarina (wild silkworm)
Pathway
bman03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bman00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114252822
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bman03019
]
114252822
Messenger RNA biogenesis [BR:
bman03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114252822
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114252822
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Pet127
Motif
Other DBs
NCBI-GeneID:
114252822
NCBI-ProteinID:
XP_028043278
UniProt:
A0A6J2KP19
LinkDB
All DBs
Position
Unknown
AA seq
2409 aa
AA seq
DB search
MNLDSLTLSLSHIHYLVVNLNKKNFKQTSQELNQIVSVYGLEAENQVLRCLLTEAARIAW
DGDRTTSAATNSIHASLLGQQLAGLLNHPAKSTVVCRAVDHPTRSVTKLLKPTNALLNRL
SRLLKLTTAEDVAFSLALRRYSTKSEIVAVAKQHLKKRFLDLIQCYLDAERGHQAERAGL
QECSPEVLQSLLTSLALDNIKLAAVTKDLFLKRLRSDFPREVVPIVLAPLIYPDDTQTPL
EEMTSADDMAAAMMENSLPDIIRDMGHAFTTSVEDCKNNMINFGAREPTAIDVARIIAVM
VRYHSNQQDGPQIQTPGNFWMSHEAKKEPAAHPHSEWNAEVFVQTLKELASNLNWKEVIL
QLDHPEFFVPDRTGLSLLFTILRLGLQSAGYPANIFPVEYLCRRWTNLEGQMSLISHILK
HSDVFCFADHPFHPVSIDILKSPPETDNKEVGTWRCLYLVELLLYAAERGYYMQVHELFK
MPLQHCPDILLLVLLQISPPITVFRQELLTTLIPIFLGNHPNSGIILHHAWHTQNPNIKP
IIMHSMADWYIRGESDQSKLSRILDVAQDLKALSLLLNVQSFPFVIDLACLASRREYLKL
DKWLTDKIRDHGETFVSAMVKFLQRRCPQVLGKAPEEQLPKAAQLPPETITTMLACLQLC
IPNVSQELQEAIYNVIGSCQTLILSKTRQNIAGIARPHTRVMETQFNPAGLGGQLFTPHV
DAIGNLAPGMANMTLGAPANTAFAMPGTLGPLVTTPGSPVRLLGGGPNSPFAMMPLPPNA
NLGALARMAPAPAIDKPRLQDPIPFPEVMHTVAKEIEDEANSYFQRIYNHPPHPTLSIDE
VLDMLKKFQDSPNKREREVFSCMLRNLFEEYKFFPQYPDKELQITAQLFGGIIERGLVPS
YVSLGLALRFVLDALRKAEGSKMYYFGIAALDRFKSRLKDYHKYCEHVRAIPHFSEFPPH
LIEYVEYGLQSQEPPNKPQGPVLPATLAAILNQSAVVTVSAPYRYVSVGYYQYTNFNAAH
VMNSDFFHRPVVCAPPSISVMSKMAACPAGSMGSRPSIANATNIDTLLTATDREEKINAP
PEPIQDKTAFIFNNLSQLNLQTKCEELKEVLTDEYYPWLSQYLVMKRASIELNFHALYSN
FLDVLKVREVNKLVTKETYRNIRVLLRSDKGIANFSDRSLLKNLGHWLGMLTLARNQPIL
LLDLDLKALVLEAYHKGQQELLYVVPFVAKVLESCAKSVVFKPPNPWTMALMNVLAELHQ
EPDLKLNLKFEIEVLCKNLGLDIMDLKPSLYLKDPEKLRQIEFQLSQPKPNKEAANTMPV
NPPIQVPPPQIPIMPPQPPMIPAEEMAGPVPPPPAGLVPADPGLMGVLGMPEPRFNYLDV
NVSSTSAFGQKICFNPHIILFQNYPHLKQFVKPAIERSIQEWIHPVVDRSIKYALTTCEQ
IIRKDFALDPDEVRMRTCAHHMMRNLTAGMAMITCREQIITTISTNLKAAFITALMPSTQ
QQKEIIESAAAVLATENMELACAFIQKTAVEKALPELDKRLISDYEMRKLARQEGRRYYD
TIVVTYQTERIPERVRLRVGGPTDMQISVYEEFACNIPGFVPVRDAGMFIPKPSQEQIPQ
LFMNPAQVYGADEMGALINTAELFLANSLGVASLAVQAANMHTLLECLFMARRSRDIVSG
CTLLQKAVDGLLDGHLVPPGASNEHIEMMARYRDIHLRVLKLLEDARVYGHVWTSKQITC
CLIECREELRYNIEAVDCLIRNHLVNLPQYDIALAHMMDNGNNYVAVAFAMQLVQLYLVD
DRNNMYVNESDLYHTTEMLVRVMSHSRTPPPEGLGSLIEILRVNQDPSAYLGERSPLGPT
AHIHSGILQVRAQNYDDPPGLQEKTENLLREWRNVLLSPLTEIELAQNFNLYVHRMNMNG
ILKSDDMIARFFRMASQMCIENVYQLLNEDRVNPPPVPQKREKFYTMCDSFIKLVSLLIK
NTADSGNPTPKLNLLNKILGIIVGWLLQDHDDQGTNFQQLPYHRLLLILFLDMNMAEPVL
ESMNYQVLTAFCHTLRIIKPSVAPGFCYAWLEIVAHRAFINRVLAVTPQQKGWGMYSTLL
IELFKFLDPFLRNTELAPPVMTLYKGTLKVLLVLLHDFPEFLCDYHYGFCDEIPPNCIQM
RNLILSAFPRNMRLPDPFTPNLKVDLLPEIALPPRAVINYSTIIPASQFKKDLDAYLKAR
APVTFLSELRGNMQVANEPGKRYNSQLMNAVVLYVGTQAIAYIRAKGQTPNMSTIAHSAH
MDIFQNFTVDFDFEGRYLFLNAIANQLRYPNSHTHYFSCCLLYLFAEANSEAVQEQITRM
LLERLIVNRPHPWGLLITFIELIKNPIYKFWSHEFVHCAPEIEKLFASVARSCIADTRGG
GGGEREAAE
NT seq
7230 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactctttaacgttgagcttatcgcatatacattatctcgtcgtaaattta
aacaagaaaaatttcaagcagacgagtcaagaattgaatcagattgtcagtgtctatggc
ttggaagcagagaatcaagttttaagatgtcttctcactgaagcggcaaggatagcttgg
gacggagaccgtacaacttctgcagctactaatagcatccacgcctcccttcttggacaa
cagttggcaggcttgctcaatcatccagctaaatcaacagttgtttgccgggctgttgat
catccaacacgctctgtaacaaagctattaaagcctacaaatgcactattgaatcgacta
tctagactgttgaagttaactacagcagaggatgttgccttttcattggctctgagaagg
tattcaacaaagagtgagatagttgcagttgcaaagcagcacttgaagaaaagattcttg
gatttaatacagtgctatctcgacgcagaacggggacatcaggcggagcgtgcaggactt
caggaatgcagccctgaagtgttgcagtcactcctcacgagtctcgcgctcgacaatatc
aaattagcggcagttacgaaggatttgtttttgaagagactgagatcagacttccctcgt
gaagtagtcccgatagtactcgcaccgttgatttatccggacgacactcagacacctctc
gaggaaatgacttcagccgatgatatggctgctgccatgatggagaattccctgccagat
attatccgagatatgggccatgcttttacaacttcagttgaggattgcaagaacaatatg
ataaactttggtgcgagagaaccaaccgcaatagacgtggctagaatcatagctgtgatg
gttcgctatcacagtaaccaacaagacggtccgcaaatacagacaccaggcaacttttgg
atgagtcatgaagctaaaaaagaaccagctgcacatccacacagtgaatggaatgctgaa
gtatttgttcagacattaaaagaattagcatctaatctgaactggaaggaagttatacta
cagctggatcacccagaattctttgtaccagaccgaacaggactatccctactattcacc
atactgagacttggtctacagagcgccggctatccggccaatatattccccgttgagtat
ttatgccgacggtggacgaatttggaaggacagatgagtttgatcagccacattctcaaa
cattctgacgtattctgttttgccgatcatccttttcatccagtatcaatagacattttg
aaatctcctcctgagaccgacaacaaagaagtgggcacttggcgttgcctctacttagtg
gagttactgctgtatgctgcagagcgtggttattacatgcaagtccatgaactctttaaa
atgccacttcaacattgtcccgatattttgctcttagttttactgcaaatcagtccaccg
attactgtctttaggcaagagttattgacgacactgattccaatatttctaggtaatcat
ccaaattcaggcataattctccaccacgcctggcatacacagaaccctaacataaaacct
atcatcatgcactcaatggcagattggtacatacgcggtgagagtgaccaatccaaatta
tctagaattttggacgtcgcacaggatttaaaggcgctgtcgctcttattgaatgtacaa
tcgttcccgtttgttattgatttggcttgtttggcgtctaggagggagtatctcaaatta
gataaatggttgaccgacaaaatcagagatcacggtgagacgtttgtgtcggctatggtg
aaatttttacaaaggcgatgtccacaggtgctcggcaaggcacccgaagaacaattgcct
aaggctgcgcagctgccacccgaaacgattacaacaatgttggcttgcttacaactatgc
attccaaatgtttctcaagaattacaggaggctatttacaacgtaataggaagctgtcag
acgttaatactcagcaaaacacgacaaaacattgcgggaatagcaagacctcatacaagg
gtcatggaaactcaattcaatccagctggcctaggagggcaattgtttacaccccacgtt
gacgctatcggtaatttggcaccgggcatggcaaatatgactttaggtgcccccgcgaat
actgcatttgctatgcccggtacactcggaccactcgtaaccactccgggctctcctgtt
aggctacttggaggcggacctaacagtccgtttgccatgatgccgttaccgcccaacgca
aacctcggagcgctcgcgagaatggctcccgctcccgcgattgataaacctcgtctgcag
gatcccattcccttcccggaagtgatgcacaccgttgctaaggaaatcgaggacgaagca
aacagttacttccaaaggatatacaatcatcctccacatccgactttatcaatagacgaa
gtactagatatgctcaaaaaatttcaggattcccctaacaagagggaacgggaagtattc
tcatgcatgttgcgtaatctttttgaagagtataagtttttcccccaataccccgacaaa
gagttacaaattactgctcaactgtttggcggtatcatcgaaagaggattagtcccaagc
tacgtgtctttagggttagcgttgcgtttcgttcttgatgctttacgaaaggccgaggga
tcgaaaatgtattatttcggaattgcggctttagatcgttttaaatctcgtcttaaagat
tatcacaaatattgtgagcacgttcgcgctattccgcattttagtgaattccctccccat
ttgatcgaatatgtcgaatatggcttacaaagccaagaacctcccaataaaccccagggg
ccggtacttcctgctacgttggctgctattcttaatcagagtgccgttgtaactgtctcg
gcgccttataggtacgtatcagttggatattaccaatatactaactttaatgcagcccac
gtaatgaatagtgattttttccacaggccagtagtttgtgctcctccatctatttcggtg
atgtcgaaaatggccgcgtgccctgctggaagcatgggtagtaggccatctatcgcgaac
gctacaaatatcgacactcttttgactgctactgacagggaagaaaaaattaatgcccca
ccagaacccatacaagataaaactgctttcatttttaacaatcttagtcaacttaatttg
caaaccaaatgtgaagaacttaaggaagtacttaccgatgaatactatccctggctttct
cagtaccttgttatgaagagagcctctattgaactcaatttccatgctttgtattctaat
ttccttgatgttcttaaagtccgcgaagtaaataaattagtcacaaaggaaacttatcgc
aatatccgtgtgttattgcgttcagataaaggaatcgctaatttctcggatcgatcgctt
ctcaagaatcttggtcactggctcggcatgctaacacttgcaagaaaccagccgattctc
ctcctcgacttggatttaaaggcgttggtcctcgaagcctatcataaaggccagcaagaa
ctgctttatgtggttcctttcgttgcgaaagttttagaatcttgcgcgaaaagtgtagta
tttaaacctccgaacccgtggacgatggcccttatgaacgttctagcagaactacatcaa
gaacccgacttgaaattgaacctcaaatttgaaatcgaagtattgtgtaaaaacttaggc
ctggacataatggatttgaagccttccctttacttgaaagaccctgaaaaattgaggcag
attgagttccaactatcacagccgaagccaaacaaagaagccgcaaatacaatgccggtc
aacccgccaattcaagtaccaccgccgcagataccaataatgccgcctcagcctccgatg
attcctgctgaagaaatggcaggacctgtccctcctccaccagctggcttagtgcccgcc
gatcctggtctgatgggcgtgctcggtatgccagaacccaggttcaactatttggatgtg
aacgtatcctccacgtctgcgttcggacaaaagatttgtttcaaccctcacataatctta
ttccaaaactacccgcatcttaaacagtttgtaaagcccgcgatcgagagatcgatccaa
gaatggattcacccagtcgttgataggtctatcaagtatgctttgacaacttgtgaacag
atcatacggaaggatttcgcattggaccctgacgaagttcgaatgcgtacctgcgctcat
cacatgatgcgcaacttgactgccggcatggcaatgatcacatgccgagagcagatcatc
accaccatcagcactaatctgaaggcagctttcatcactgctctcatgccatcaacacaa
caacaaaaagaaatcatcgagagtgcagctgctgtccttgctactgaaaacatggaactg
gcctgcgccttcattcagaagacagccgttgagaaggctctacctgaattagacaaacgc
ttgattagcgattacgaaatgcgaaaactggcccgtcaagaaggccgccgctattatgac
accatcgtcgtgacttaccagactgaaaggatcccggaaagagtccgcctgcgcgtcgga
ggtccgacagacatgcagatatcagtatacgaagagttcgcatgcaacattccgggattt
gtccccgtcagagatgcgggcatgttcatcccgaagccgtctcaagagcagattccacag
ctgttcatgaatccagctcaagtgtacggcgctgacgagatgggcgctctgataaacact
gcggaactattccttgccaattccttaggtgtggcttccttggctgtccaggcagcgaac
atgcatacgctgctcgagtgcttgtttatggcgagacggagtcgcgatattgtgtctggc
tgtactctactgcagaaggctgtagatggtttgcttgatggacatttagtcccacccggt
gcgagcaacgaacacatcgaaatgatggcccgctaccgcgacatccaccttcgtgtcctg
aaactactcgaagacgccagagtctatggacacgtttggacttctaagcagatcacctgc
tgcttgattgaatgcagggaggaactccgatacaatatcgaggctgttgactgccttatc
agaaaccatttggttaatctaccacagtatgatatcgcccttgctcatatgatggacaat
ggcaataactacgtggcggtagcattcgctatgcaactagtacagctgtatcttgtcgat
gacagaaataacatgtacgttaacgaatctgacttgtaccacacgaccgaaatgttagtg
agggtcatgtcccactcaaggacgcctccgcccgagggtctgggctccctgatcgagatt
ttgagggtgaatcaggaccctagtgcatatttgggcgaaaggtcaccgctcggaccgacg
gcccacatacattctggaatactgcaagttcgagcacaaaactatgacgacccacccgga
cttcaagagaagactgagaatttactccgtgaatggaggaatgttctcctcagtcctctg
acagagatcgaactggcgcagaacttcaacttgtatgtccaccgaatgaacatgaacggc
attctcaaatctgatgacatgatcgctagattcttcagaatggcctcgcagatgtgcatc
gagaatgtataccaacttctgaacgaggacagggttaatccacctccagtgcctcagaaa
cgtgagaaattctacaccatgtgcgactcttttatcaaacttgtctcgcttttgatcaag
aatacagccgatagcggaaatcccactccgaaattaaaccttctgaacaagattctaggc
attatagttggctggctactccaggaccacgatgaccagggcaccaacttccagcagcta
ccgtaccaccgcctactcctgattctgttcctcgacatgaacatggctgagcctgttcta
gaatctatgaactatcaggttctgactgcgttctgccacacccttcgcattatcaaacca
agtgtcgctcccggattctgttacgcgtggctcgagattgtggcccaccgtgccttcata
aaccgcgtcctagctgttactccacaacaaaagggctggggaatgtactcgaccttactc
attgagctgttcaaattccttgatccattcctgcgtaacactgagcttgctcctccagtc
atgacgctatacaaaggaacactcaaggtgttgttggtcttactccatgatttcccggag
ttcctgtgcgattaccactatggtttctgtgacgaaatccccccgaactgcattcaaatg
cgcaatttaatactgtccgctttcccgcggaacatgaggcttcccgatccgttcacgccg
aatctgaaagttgacttgctcccggaaattgctctaccgcctcgtgcggtcatcaactat
tctacgatcatccctgcgtcacagttcaagaaggatttggacgcgtacctcaaagcgaga
gctccagttaccttcctgtctgaattaaggggaaatatgcaggttgcgaacgagcccggc
aagcgatacaacagtcagctgatgaacgcggttgtcttgtacgtcggcacacaggccatt
gcctatattcgtgctaaagggcaaactccgaatatgtcgacgattgcacattcagctcac
atggatatcttccagaactttaccgtggatttcgattttgaaggccggtacctgttcttg
aacgcgatagccaatcagctgcgttacccgaacagtcacacgcactacttctcttgctgt
ctcctctacttgttcgcggaggccaattcggaagcagtacaagaacagatcaccaggatg
ctcctggaacggctgatcgtcaaccgtccgcacccttggggtctgctcatcactttcatc
gaactaatcaagaatcccatctacaaattctggtcccacgaatttgtacactgcgctccg
gagatagagaagctgttcgcttcggtggcgcgatcgtgcatcgccgacacaagggggggg
ggggggggggagagggaagcggccgagtag
DBGET
integrated database retrieval system
