Bombyx mandarina (wild silkworm): 114252911
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Entry
114252911 CDS
T05882
Name
(RefSeq) collagen alpha-2(IV) chain
KO
K06237
collagen type IV alpha
Organism
bman
Bombyx mandarina (wild silkworm)
Pathway
bman04512
ECM-receptor interaction
bman04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bman00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114252911
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
114252911
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bman04147
]
114252911
00536 Glycosaminoglycan binding proteins [BR:
bman00536
]
114252911
Exosome [BR:
bman04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
114252911
Glycosaminoglycan binding proteins [BR:
bman00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114252911
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
114252911
NCBI-ProteinID:
XP_028043402
UniProt:
A0A6J2KR16
LinkDB
All DBs
Position
Unknown
AA seq
1806 aa
AA seq
DB search
MSGPARARLHALHLVPAALLIFFWSPTPVSTVVCNQTLCDCRGIKGDQGSIGPPGIPGLQ
GDYGADGLEGRIGLPGVPGDWGERGDFGDKGERGTEGSYGRRGDEGPQGLPGLEGVFGFP
GLDGCSGIDGVQGVPGIQGPPGDRGIPGPYGEKGLQGLAGEGGVNSRGAKGDQGDGGRPG
SYGLPGPQGWRGDSGLPGDEGDQGPMGLKGEPGYSGDLGEDVIGPAGEKGDQGNVGDRGR
PASLVIVDEVREYNISITRGSKGEKGLRGQQGVKGIKGETGSVGLRGTYGPNGLQGYKGD
QGDDGPRGKPGHRGPQGPPGQKGIKGAPGYAGPDGANGLTGPSGEDARPGNPGPQGFSGE
PGIFDETLNEPLLPGSMGPQGPVGFVGPMGAPGLDGAVGQPGLMGPPGLPGAKGLPGPQG
APGISPKGEPGDDGFKGLPGPRGPNGYPGIQGPVGPKGFKGNTVIGEPGEEGTPGIDGIP
GLRGDRGEPGAIGPAGYPGRGVYGAGPPGDRGPPGRPGIAGSPGNPGRPGSPGLKGEHGD
DCPFCPSGLPGSKGQKGDDGFTGRQGFPGFVGLPGPRGQRGAPGIPGINGPKGPKGNKGL
AGMAGPQGPKGPEGRLNTPAYALTVADRGPRGEPGFIGPPGFPGDTGRQGPHGDSGITGF
KGVRGDFGQPGTPGRNGSRGRDGVPGWPGATPDIPMAFLFGEKGDMGLTGEEGDKGEIGP
PGETGESLIDGIYAKGEKGYPGYPGFNGVPGRKGIRGDQGSDGYPGMGGDIGIQGTSQQG
PKGFKGFSGEKGSIGPYGDPGSPGYRGPFGSDGQKGQKGMRGDGGYATLPGERGSNGING
ERGDNGEPGYPGTPGRSGVIGQKGVTGAPGDIGPDGPPGPRGRKGFPGIIIQGAPGLPGR
PGSPGPMGPIGAQGLQGSNGLQGFTGPKGMKGNSGRYGRRGEPGVPGSIGFTGFSGLMGL
PGASGKPGERGDKGAPGFNGEPGQDGLVGPLGPKGYIGNPGLTGKPGIPGLPGGKGERGI
YGYQGPKGDRGDNAVSGSKGEPGEHGINGYTGRDGIPGQKGVKGPQGMPGLSIRGPPGTK
GDKGDTGFSGTPGFQGPRGAIGDKGFPGQTGEPGEKGLPGTDGFAGKNGLIGTKGQQGLY
GASGRKGDRGDRGMDGEPGRIGIPGLPGNKGFQGPQGRIGPTGIKGDRGDIGRTIYLPAT
KGDIGDIGFPGLPGNPGEYGDPGYTGHIGRKGEQGDVGIKGMVGNEGLPGFIGERGDQGP
RGLPGRNGEFPERGEQGKAGIDGLPGWPGPMGQKGAPGEYGVDGPEGTPGQPGLTYEGAK
GDRGMPGFTGRRGYLGIPGPRGMEGHPGLKGEKGNAGEIGFAISPKGQPGYPGLAGYNGL
KGEKGTIGETGRIGIYGEQGLVGVKGETGDEGEAGFIGPPGLQGIEGDKGDTLLPSDILP
GQPGDVGLPGFDGRDGVAGIPGSFGRNGYLGVKGQRGEIGLQGPPGEPGPQGLQGIKGKR
GLKGFVGLHGSVGRPGPPAPPPPIPKSRGFYFTVHSQTRLIPKCPSGTSPLWEGFSLIHI
IANGKAHGQDLGAPGSCLRKFSTMPYLFCNLNNVCDFAQREDYSFWLSTPEPMPMAMTPI
QARDVGTYISRCQVCEAPTRTIAIHSQSSEVPTCPDKWKELWVGYSFLMHTAGADASGQS
LISPGSCLREFRTRPFIECNGLGRCNYFATAVSYWLSTINDNWMFQKPIQETLKTDKDSR
VSRCTVCMRQWASQTYSTATRTGDVSFVPNAQRRPFRGPSPTGRVPRWHRRGYRVASRKV
PSFNKH
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcccggcgcgtgcgcgccttcacgcgctacatcttgtgcccgctgctcttctg
atattcttctggagtccaactcctgtttctacagtggtctgtaatcagactctgtgtgat
tgtcgtggaataaaaggagatcaaggaagcataggccctccgggcatcccaggccttcaa
ggggactacggagcagatggactcgaaggaagaattggtttacccggtgtgccgggagac
tggggagaacgcggagatttcggggacaaaggagaacgaggaaccgaaggatcttatggc
cgacgaggagacgaaggaccacagggtctgcctgggttagaaggagtatttggattccca
ggattggacggctgtagtggtattgatggagttcaaggcgttcccggtatacaaggtcca
cctggtgatagaggtattccaggaccttacggagaaaaaggccttcaaggcttggcagga
gaaggtggagttaactcaagaggtgcaaaaggagatcaaggagatggtggtagaccaggt
agttatggacttcctggaccccagggttggagaggagacagtggtctacccggagacgag
ggtgatcaaggcccaatgggcttaaaaggagaacctggatatagtggcgacttgggtgaa
gatgtcataggaccagctggagaaaagggagatcaaggcaatgttggtgatagaggaaga
cctgcctctctagtaattgtcgatgaagtacgagagtacaacatttcaataacaaggggg
tcaaaaggtgaaaaaggattacgtggacagcaaggtgtaaaaggaattaaaggagaaaca
ggttctgtgggtctaaggggaacttatggacctaatggactacaaggctacaaaggagat
cagggtgacgacggacctcggggcaagcctggacaccgaggaccacaagggccgcctgga
caaaaaggcattaaaggtgctcctggatatgcgggaccggatggtgcgaatggtttaaca
ggacccagtggagaagatgcaagaccgggaaatcctggcccgcaaggcttttccggagaa
cctggaatattcgatgagacactaaacgaacctttactaccaggttcgatgggtccacaa
ggtccagttggctttgtcgggcctatgggagcacctggattagacggtgcagttggccag
cctggcttaatgggaccaccagggctaccaggagctaaaggcctacctggtccacaaggt
gctccaggtatatcgcccaagggagaacccggagatgatggttttaaaggtctgcctggc
ccacgtggccctaacggatatccaggaatacaaggacctgttggtcctaaaggttttaaa
ggaaacacagtaattggggaacctggtgaagagggcaccccaggaatagatggcattcca
ggtttaaggggtgacaggggtgaaccaggtgcaatcggaccagcaggatatcctggcagg
ggcgtttacggtgctggaccgccgggtgatcgaggcccacccggaagacctggaatagct
ggaagccctggtaatccgggtcgtcctggatcgcctggtctaaaaggagaacatggagat
gactgtccattttgtccttcgggtctgcctggcagtaaagggcagaaaggagacgatggt
tttactggtcgtcaaggattcccaggttttgttggcctaccaggacctcgtggtcaacgt
ggagctccagggatacctggaataaatggtccaaaggggccaaagggtaataaagggctt
gctggtatggcaggacctcaaggaccaaaaggacctgaaggacgtttgaatacacctgca
tatgccttaaccgtagcagaccgcggtcctcgcggtgaaccaggttttatcggaccaccg
ggttttcctggggacactggtcgacaaggacctcacggagattcaggaatcactggattc
aaaggtgtgcgcggtgacttcggccaacccggaactcctggaagaaacggatcccgtgga
agggatggagtacctggatggcccggagctactccggatattccgatggcttttcttttc
ggtgaaaaaggagatatgggtttaactggcgaagaaggagataagggagaaattggccca
cctggagaaactggagaatcactgattgatggcatttatgctaaaggagaaaaaggatat
ccaggataccctggcttcaatggtgtacccgggagaaaaggtattcgaggggatcagggt
tcagatgggtacccaggtatgggaggtgatattggaatacagggtacatcacaacaagga
ccaaagggcttcaaaggatttagtggagaaaaaggtagcattgggccatacggtgatcca
ggtagtcctggttaccggggaccctttggcagcgatggtcaaaaaggacaaaaaggtatg
cgtggtgacggtggctacgcaactttgccaggagaaagaggatcaaacggaataaacgga
gaacgaggcgataatggagagcctggttatcctgggactcccggaagatctggagttata
ggtcagaaaggcgtaactggagcgcctggagatataggacctgatggaccacctggacct
cggggacgaaaaggtttccccgggataataatacaaggtgcacctggactacctggacgt
ccaggatcacctggtccgatgggacctattggtgcacaaggcttacaaggaagtaacggc
ctacaaggttttacaggacctaaaggaatgaaaggaaactcaggaagatatgggcgtcgc
ggtgagcctggtgtacctgggtcgatagggttcactggattttctggattaatgggatta
cctggagccagtggaaagccaggagagcgaggtgataaaggtgctcctggttttaatgga
gagcctggtcaagatggtttagtagggcctctaggacctaaaggctatataggtaaccca
ggcttaacaggaaaaccaggtattccaggcttaccaggaggaaagggagaacgtggaatt
tatggttatcaaggaccaaaaggagaccgaggagataacgcggtttctggatcaaaagga
gaacccggtgaacatggcataaatggttatacagggagagatggaatacccggacaaaaa
ggagttaagggtcctcaaggaatgcctggtttaagcatacgaggtccgcctggtactaaa
ggtgataaaggagatacaggtttctcagggacacctggtttccaaggaccaagaggtgct
ataggtgacaaaggtttccctgggcaaacaggagaaccaggtgaaaaaggtttgccgggt
actgatggattcgcaggtaaaaatggattaattggtacgaaaggacagcagggtctatat
ggagcatcaggtagaaagggtgaccgtggcgacagaggaatggatggtgagcctggacga
atcggcattccgggattacctggtaataaaggttttcaaggaccacaaggacgtataggc
cccacaggaatcaagggtgatcgcggtgatattggtagaaccatttatctaccagctact
aaaggagacattggtgatattgggttccccggccttcctggtaatccaggagaatatgga
gaccctggatatactggacatattggtagaaaaggagagcagggtgatgttggaatcaaa
ggaatggtcggcaacgagggtcttccaggtttcattggagaaagaggtgaccaaggacct
cgtggtttacctggtcgaaacggtgaatttcctgaaagaggcgaacaaggtaaagcagga
attgacggattaccaggatggcctggtcccatgggtcaaaaaggagctccaggagaatat
ggagtagatggtcctgaaggcacaccaggtcaaccgggattaacatatgaaggagcgaaa
ggtgatcgtggtatgcctggttttacgggacgccgaggatacctagggataccaggaccg
cgggggatggagggacatcctggattaaaaggtgaaaaaggaaatgcaggtgaaataggt
tttgccattagtcccaagggccaacctggatatccgggtttggctggttacaatggatta
aaaggtgaaaaaggtacaatcggagaaactggaagaattggaatttacggagaacaaggc
ttagtcggggtcaaaggagagacaggcgacgaaggtgaagctggattcatcggacccccc
ggtctacaaggaatagaaggagacaaaggagatactctgcttccatcagatattttacct
ggacaacctggtgatgttggattgccaggatttgatggacgggatggtgtagcaggaatc
ccagggtcttttggtcgaaatggttacctgggtgtcaaagggcaaaggggagaaatagga
ttacaaggtcctcctggagaaccaggccctcaagggctacaaggtatcaaaggtaaacga
gggcttaaaggtttcgttggattgcatggcagcgtcggtcgtcccggtccaccagcacct
ccacctccaatacccaaatctagaggattttatttcacggttcattcacaaacaagattg
ataccgaaatgtccatctggaacatcaccgctttgggaaggcttttcgttaattcatata
atcgctaatggaaaagctcacggtcaagatctcggcgctccaggtagttgtctccgtaaa
ttctccacaatgccgtatttgttttgcaatctaaataatgtttgcgactttgcccaacga
gaagactacagcttttggctatctactccagaaccaatgcccatggcaatgacgccgatt
caagccagagacgtcggcacatatatttctcgatgtcaagtatgcgaagctccaactagg
acaatcgctatacacagtcagagcagtgaggtgccgacatgtccagataaatggaaggag
ttgtgggtgggctacagctttttaatgcataccgcgggcgcagacgcatcaggacagagc
ctcatctcacctggttcatgcttacgagagttcaggacacgaccgttcattgaatgtaat
ggtctcggacgttgtaactatttcgctactgctgtctcatactggctgtctacaataaac
gacaactggatgttccaaaaacccatacaggaaacattaaaaactgataaagactcaaga
gtcagcagatgtacggtgtgcatgagacaatgggcatctcagacgtatagcaccgcaacg
agaaccggtgatgttagctttgtacccaacgcccaacgacgacctttccgtgggccaagc
cctacaggcagagtaccacggtggcaccgcagaggttatcgtgtcgcctcgcggaaggta
ccttcgtttaacaaacattaa
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integrated database retrieval system
