Bombyx mandarina (wild silkworm): 114253068
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Entry
114253068 CDS
T05882
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
bman
Bombyx mandarina (wild silkworm)
Pathway
bman04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
bman00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114253068
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bman00536
]
114253068
Glycosaminoglycan binding proteins [BR:
bman00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114253068
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
114253068
NCBI-ProteinID:
XP_028043627
UniProt:
A0A6J2KRN5
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MWQIKVAVLAFVSLATAKELSEPLREEIIQELPQAQDPDPHYDDYNPFEDDENAIIAEQD
FRSATTGTSEYPRSGIVSPRVPPALRCVEMGRTYSDGDTWKRDNCTICQCFGGQTNCTVL
PACLSAPTPTRPAVPPTPSHGVPGRQGDEGPQGPPGVPGVNGVPGAPGIPGPSGPMPDVN
AYLAQLAATAGGDKGPAFDPYQYMQASVGAPGIRGIAGPQGPPGPQGFQGPRGEPGEPGM
PGPQGIAGERGPPGLPGKDGAPGEDGEPGPVGAAGQPGPRGSPGVPGIQGLKGHRGFDGK
DGAKGDQGQPGEKGPTGLPGQMGPTGLVGPVGPRGERGREGPPGPPGIRGADGATGLPGP
VGNVGKPGSPGFPGSPGIKGEQGVVGPKGSQGLQGPRGESGRPGTTGEAGSPGIPGNDGI
PGEKGVQGQPGPSGPQGFPGPRGTPGVAGDPGMPGSKGMPGQPGERGTKGDAGSRGESGA
PGPRGLPGSVGAEGKRGKRGLRGPAGNVGPQGERGSQGMRGLPGVDGAAGPKGQPGERGG
LGLPGPKGSLGDPGRPGSQGLQGPRGAIGRQGIPGKTGPQGERGIPGADGRPGEQGPQGL
QGPPGMMGNPGERGLQGEPGKDGEQGLQGPQGPKGDAGRDGSPGIQGPQGPQGSAGERGP
QGQTGPTGFPGMPGTAGQPGSPGKEGEPGIAGPAGPPGLIGPRGERGYPGERGQPGQAGT
PGEKGETGSQGADGPPGPEGARGSKGHPGPIGAMGMPGPRGPTGFAGEKGERGAAGPSGV
DGPPGRQGDQGPQGPVGPAGPPGEPAERGEPGTAGVPGEPGAPGSTGERGQPGLQGSPGL
PGSPGLTGMPGLKGDRGYGGPKGQQGLPGSPGVPGEMGLRGLPGVAGAKGARGEQGHKGD
PGHAGLPGKPGDLGPPGPQGSTGPAGTAGIQGAKGASGEAGRPGPPGPIGLTGSAGPEGP
KGERGSEGEQGPQGQAGPPGSAGERGPSGLPGMVGPPGPQGLRGTQGESGTPGKPGADGA
QGSPGAPGLQGPPGPMGEPGPEGRPGKQGQPGISGRPGDKGPIGPPGSSGSPGLPGMQGP
PGPSGPTGPTGERGPRGELGPPGVDGPQGPSGKQGPPGLDGAKGERGEAGADGSKGHAGL
PGLPGMIGAPGRVGERGLPGPMGPPGKDGDVGPRGTPGRDGSSGPQGQMGPPGGRGPAGD
PGKHGPPGPSGPPGPPGPPGEGLAYDAAAIAAMLQQGSIKGPDPLGDDPNSLPPRFFKDD
MSLSERKEIVIKAYERLKVSLEKFLKPDGSKDAPAKTCGDIKYHHPSFESGQYWIDPNGG
DMNDAIMVHCDMSTGASCVYPKPMQTQDISYKGEEKEPWLSEMEEGFTINYKADHTQLTY
LQLLSLKAVQNVTLHCRNTVGYFDPSTKNYKRGIKLLAYNDAEILPKANNRLRYTALLDE
CQYKKSSWAKTIVEYSTDKPGRLPLLDVAIRDVGKPNQTFRVELGLACFM
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgtggcagatcaaagtggcggtcctagccttcgtgtctttggcaacagcaaaggagcta
agcgagccgcttcgtgaggagataatccaagaactgccgcaagctcaggacccagatccc
cattacgacgactataacccgttcgaagatgacgaaaatgctatcattgccgagcaggac
ttcagatctgcgacaactggcacatctgaatatccccgatctggcatagtgagtccgaga
gttccaccggctcttcgttgcgtggaaatgggaaggacgtactcggatggggatacatgg
aagcgagacaactgtacaatctgtcagtgcttcggaggacagaccaattgcaccgtactt
cctgcttgtttgtcagctccaacaccgactcggcctgctgtaccaccgaccccatcacac
ggagtcccaggtcgccaaggagacgaaggtcctcaaggaccgcctggagttccaggtgtc
aacggcgtaccaggagcccccggcattcctggcccaagtggtcccatgcccgatgtaaac
gcatatttggcacaactagcagcaaccgctggcggcgataagggcccagcgtttgacccg
tatcagtacatgcaagcctctgttggagcaccaggaattagaggaatagcaggaccgcaa
ggcccgcccggcccgcaaggttttcaaggtccaagaggagagccaggtgagccaggaatg
cctggaccacagggtatagctggagaaagaggtccaccaggattgcctggaaaagatggc
gctcctggtgaggatggtgaaccaggtccagtaggagccgctggacagccaggccctcga
ggttcgccgggagttccaggtattcaagggctgaaaggtcacaggggattcgacgggaaa
gacggtgcaaaaggagatcaagggcaacctggtgaaaaaggacctacaggactgcctggg
caaatgggacctacaggacttgtgggaccagttggcccccgaggtgaacgtggtcgtgaa
gggcctccaggtcctcctggaatccgaggtgctgatggtgcaacaggattacctgggcca
gtgggcaatgttggtaaacctggttcaccaggatttcccggttcccctggaataaaaggc
gaacaaggtgttgttggacctaaaggcagccaaggtcttcaaggacccagaggagaatca
ggacgtccagggactacaggcgaagctggttctccgggaatccctggaaatgatggaatt
cctggtgaaaaaggtgtacaagggcaaccggggccttcggggcctcaaggtttcccagga
ccaagagggactccaggagtagcaggtgatccaggcatgccaggatctaaaggaatgcca
ggccaacctggtgaaagaggtacaaaaggtgatgctggtagcaggggagaatctggtgca
cctggacctagaggtctaccaggttcggtgggagcagaaggcaaacgtggtaaacgtggt
ctaaggggacctgctggtaatgttggacctcagggagagcggggttcacaaggaatgaga
ggcctgcctggtgtggatggtgctgccggacctaaaggtcaacctggagaacgaggtggt
ctaggattaccaggacctaagggtagtttgggggaccctggtagacccggtagtcaaggc
ttgcaaggcccaagaggagctatcggaagacaaggtataccgggaaaaactgggccgcaa
ggtgaaagaggtataccaggtgctgatggtcgtcctggcgaacaaggaccacaaggattg
cagggaccacctggtatgatgggaaacccaggggaacgtggattgcaaggtgagcctggt
aaagacggtgaacaaggactgcaaggacctcaaggacccaaaggtgatgcaggacgagac
ggtagtccaggtatccaaggacctcaaggacctcaagggtcagcaggtgaaagagggcct
cagggtcaaactggacctacaggatttccgggaatgcctggtaccgctggacaacctggt
tctccgggcaaagagggggagcccggtatagctgggccagcaggtcctcctggactaatc
ggaccacgtggtgaaagaggatatcctggtgaacgcggacaacccggacaagctggtact
ccaggagagaaaggagaaactggttctcaaggagcagacggaccaccgggtccggaaggt
gctaggggcagtaaaggacatccaggaccaataggagccatgggtatgccggggcctaga
ggacctacaggtttcgctggcgagaaaggcgaaagaggagcagctggaccgtccggcgtt
gatggacctccaggccgtcagggcgatcaagggccgcagggcccagtagggccagctggt
cctcctggagagccggcagaacgcggagagccgggtactgcaggggtccctggggagcct
ggagctccgggttctactggcgaaagagggcaacctggcttacaaggatccccgggactg
ccaggatctcctgggctaactggaatgcctggtcttaagggtgatagaggatatggcggc
cccaaaggacagcaaggcttacctggaagtccaggtgtacctggagaaatgggtttgaga
ggattgcctggagtggccggtgctaaaggtgcacggggtgaacaaggtcacaagggggat
ccgggtcatgccgggttacctgggaaaccaggggatttgggtcctccgggacctcaaggc
agtactggacctgccggaacagcaggtatccaaggagctaaaggagcatccggtgaagcc
ggtcgtcctggtcctcctgggcctatcggcttgaccggctctgcagggccagaaggacct
aagggcgaacgaggaagtgaaggagaacaagggccgcaaggtcaagctggaccacctgga
tcagctggcgagagagggccaagtggcttaccgggtatggttggacctccaggaccgcaa
ggactacggggtacacagggtgaaagtggtacaccaggcaaaccaggcgcagatggggca
caaggctcaccgggagctcctgggcttcaaggaccgccaggtcctatgggtgaaccagga
cccgaagggagaccaggaaaacaaggacaacctggaatatctggccgtccaggtgacaaa
ggacctataggaccccctggttcttcaggctcccctggattacctggaatgcagggtcca
cctggaccttctggaccaactgggccaactggcgagcggggtcctagaggtgaattaggc
cccccaggtgtagatgggcctcaaggtccttcaggcaaacagggaccaccagggcttgat
ggagctaaaggcgaaagaggcgaggctggtgctgatggaagtaaaggccatgctggcctt
cctgggctaccagggatgatcggcgcaccaggaagagtcggcgaacgtggcttacctggt
cctatgggacctcctggaaaggatggcgatgttggaccaagaggaacgccaggacgtgac
ggaagttcgggtcctcaaggacaaatgggtccaccgggaggcaggggtcccgctggagat
cccggaaaacatgggcctcctgggccatcaggaccacccggaccgcccggacctccagga
gaaggactggcttatgacgccgctgctatcgctgctatgttgcagcaaggttctataaaa
ggcccggatccgcttggcgatgaccctaactccctgcctccaaggttcttcaaggacgat
atgtcgttgtcagaacgtaaagaaatcgttattaaggcatacgagcgactcaaagtgtct
cttgagaaattcttaaagccagatggctcgaaggacgcacctgcgaagacttgtggcgac
atcaaataccatcatccgagctttgaaagcggtcaatactggatcgatcctaatggtggt
gacatgaatgatgccattatggtccactgtgacatgtcgactggagccagctgcgtatat
cccaagcctatgcagacccaagatatttcgtacaaaggagaagagaaagagccatggctt
agtgagatggaagaagggtttacgatcaactacaaggcggatcacactcagctgacatat
cttcagctcctttcactgaaagcagttcagaacgtcaccctccattgtcggaacaccgtc
ggctacttcgatccctcgacgaaaaattacaaacggggaatcaaattgctcgcgtacaac
gatgccgagatccttcctaaagctaataacaggttgaggtatactgccctactagatgag
tgccagtacaagaaaagttcatgggcgaaaaccatcgtggaatattctactgacaagcct
ggccgtcttccactcttggacgtcgccatccgagacgtcggcaaaccaaaccagaccttc
cgagtagagttgggacttgcatgctttatgtaa
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