Bombyx mandarina (wild silkworm): 114253131
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Entry
114253131 CDS
T05882
Name
(RefSeq) CCR4-NOT transcription complex subunit 6 isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
bman
Bombyx mandarina (wild silkworm)
Pathway
bman03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bman00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
114253131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bman03019
]
114253131
Enzymes [BR:
bman01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
114253131
Messenger RNA biogenesis [BR:
bman03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
114253131
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
114253131
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
LRR_9
Motif
Other DBs
NCBI-GeneID:
114253131
NCBI-ProteinID:
XP_028043694
UniProt:
A0A6J2KU36
LinkDB
All DBs
Position
Unknown
AA seq
546 aa
AA seq
DB search
MSRNKDKHEGASGRTYHIMSEAERASGRRGGWTTLEVTGGVRALAPPLFQLTHLTALYLN
DNSLQRIPTDINQLVNLHTLDISNNKLRSLPVELGDLIQLRELHLHNNYLRALPYELGRL
FHLQLLGLQGNPLNKEMLSIYNDSNGTAKLITYMLDNLQVSATLPPQRPWIPLTRPNRTR
PTCIFTVMCYNVLCDKYATRQMYGYCPSWALEWDYRKKGILDEIRHYSADLISLQEVETD
QFYNFFLPELKQDGYDGIFSPKSRAKTMSESERKYVDGCAIFFRSAKFALVKEHLIEFNQ
LAMANSEGSDNMLNRVMPKDNIGLAALLKTKEAAWENGNVASLPTDSSMIGQPILVCTAH
IHWDPEFCDVKLIQTMMLSNELRTILDDSGRTLRLAGQRDNVQLLLCGDFNSLPDSGVVE
FLSAGRVSSEHRDFKELGYATSLRRMPGSEHEFTHNFKLASAYSEDIMPYTNYTFDFKGI
IDYIFYSKQTMTPLGLLGPLSQEWFREHKVVGCPHPHIPSDHFPLLVELEMSPSTSGNSN
GLIGRR
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcaacaaagacaagcacgagggcgcgagtgggcgcacataccatatcatgtcg
gaagcagaacgagcctctggtcgtagaggaggttggactactcttgaggtaacaggaggt
gtgcgcgccctagcgccgcccctctttcagctgactcacttgacagcgctgtatttgaac
gacaactcactgcagcgcatccctaccgacatcaatcaactcgtcaacttgcacacactg
gacatatccaacaataaactgagatcgctgcccgtcgagctaggagacctaatacagctc
agagaactacacctgcataataactacctaagagcactgccttatgaacttggtaggctc
ttccacctccagttgctcgggctacaggggaaccccctgaacaaggagatgctgtcgata
tacaacgactccaacggaaccgccaagctgatcacgtacatgctcgacaacttgcaagtt
tctgcaacattaccgccgcagagaccttggataccgctaacgcgaccgaacaggactcgt
ccgacttgcatcttcacggtgatgtgctataacgtgttgtgcgacaagtacgcgacaaga
cagatgtacggctactgtccgagttgggcgctcgagtgggactacaggaagaagggtatt
ttagacgaaattaggcattactcagcagaccttattagtttacaggaagtcgaaacggat
cagttctataattttttcctgccagaattaaaacaggacggttatgacggaattttctcg
ccgaaatctcgtgcaaagacgatgtcagaatcggagaggaaatacgtcgacggatgtgca
atatttttcagatctgcaaagttcgcattagttaaggagcacctcatagagttcaatcag
ctggcgatggccaacagcgagggatcagacaacatgttaaatcgagtaatgccgaaggac
aacataggtcttgcagccttattgaagactaaagaagccgcctgggagaatggtaatgtt
gctagtttaccaacggactcgtcaatgatcggccagccgatactcgtctgcacagctcac
atccactgggacccagagttctgcgacgtgaaactcatccaaacgatgatgttaagcaac
gagctcagaacgatcctggacgattcgggaaggacattacgtctcgccggacagagagac
aacgtgcagctgttgctctgcggggacttcaattccttgcctgatagcggcgtggtcgag
ttcctgtccgcggggcgcgtctcgtctgagcatcgcgacttcaaggagctcgggtacgcg
acgtccctgcgccgcatgcccggctccgagcacgagttcacgcacaacttcaagctggcc
tcggcctacagcgaggacatcatgccctacaccaactacacgtttgacttcaaaggtatt
atcgactacatattctacagtaaacagacgatgacccccttagggttgttgggtcccttg
tcgcaggagtggttccgcgagcacaaggtcgttggctgtcctcatccgcacataccttca
gatcacttcccgctgctagttgagctggagatgtcccctagcacgagcggcaactcgaac
gggctgatcggccgcaggtag
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