Bermanella marisrubri: HF888_00090
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Entry
HF888_00090 CDS
T06527
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
bmar
Bermanella marisrubri
Pathway
bmar03030
DNA replication
bmar03410
Base excision repair
bmar03420
Nucleotide excision repair
bmar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HF888_00090 (polA)
03410 Base excision repair
HF888_00090 (polA)
03420 Nucleotide excision repair
HF888_00090 (polA)
03440 Homologous recombination
HF888_00090 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmar03032
]
HF888_00090 (polA)
03400 DNA repair and recombination proteins [BR:
bmar03400
]
HF888_00090 (polA)
Enzymes [BR:
bmar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HF888_00090 (polA)
DNA replication proteins [BR:
bmar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HF888_00090 (polA)
DNA repair and recombination proteins [BR:
bmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
HF888_00090 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HF888_00090 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_2
HHH_5
CCDC138_cc
Motif
Other DBs
NCBI-ProteinID:
QIZ82735
LinkDB
All DBs
Position
complement(20063..22813)
Genome browser
AA seq
916 aa
AA seq
DB search
MTQKSSPVDNDPAHKVILVDGSSYLFRAFHALPPLTNSKGNPTGAVKGVINMIRSLKKGY
PDSKIIVVFDAKGKTFRNDIYPEYKAHRPPMPDDLRVQIQPIHDIIKAMGLPLLVIDNVE
ADDVIGTLAHEATDQGIETLVSTGDKDMAQLVSEHVQLINTMNNEQLDVDGVQAKFGVPP
EHIVDYLALMGDKVDNIPGVPKVGEKTAKALIAGLGSLEDVYSRLDDVATLDFRGAKSMK
AKLEEHKEQAFLSKELATIKTDVELEWGLGDIKIDEPDNKKLLELYQECEFKTWIKELST
GEVEEPKQQQLPVDRSLYTNLSTEEALQEWLDKLDKAELYAIDTETTSLKYMEAEIVGIS
LAVAPNEACYIPLAHDYAGAPEQLDRDWVLQKMKPLLEDETPKKVGQNLKYDAHVLKNYD
IELNGIAHDTMLESYVLNSTASKHNMDDLAKHYLGHECIDFESIAGKGAKQLTFNQIPVE
QAGEYAAEDADITLRLHQVLWPQLEADESLLTLYKKVELPLVQVLTNMEYVGASVNADKL
HQQSSEIEQRLQELERKAHDIAGEVFNLGSTKQLQAIFFEKLELPVIKKTPKGQPSTAEE
VLVELSHDYELPKVILEHRGLAKLKNTYTDKLPLMINSKSQRVHTSYHQAVTATGRLSSS
DPNLQNIPIRNEEGRKIRQAFEAPEGYTLVAADYSQIELRIMAHLSGDKGLLDAFKNGKD
IHRATAAEIMEVDEADVDNEQRRRAKAVNFGLIYGMSAFGLARQLGIGRSEAQEYIDKYF
DRYPGVKKYMESTRELAAKQGYVETLFGRRLYLPEINSRNGMRRQAAERTAINAPMQGTA
ADIIKRAMIKMHQWIQESAHDVHMIMQVHDELIFEVPDGQLDAVSAEIKSIMEAAADLDV
PLLVDVGHGDNWQQAH
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgacccagaagtccagtcctgtagacaacgatccagcccataaagtcattttagtggat
ggttcatcctatttgttccgcgcgtttcacgccctaccaccgcttaccaatagtaagggg
aatcctactggagcggtgaaaggtgtgatcaatatgattcgcagtcttaaaaaaggctac
ccagatagcaaaatcattgtcgtatttgatgccaagggtaaaacgttccgtaacgatata
taccctgagtacaaagctcatcgccctcctatgccagacgatctgcgcgtccaaattcag
ccgattcacgacatcatcaaagccatgggtcttccattgctggtgattgataacgtcgaa
gcggatgatgtcataggcacgcttgcccacgaagccactgatcaaggcatcgaaactctg
gtaagtacaggtgataaggacatggcgcagctggtgagcgagcatgttcagctcatcaat
accatgaataacgagcagttagatgtggacggcgtacaagccaagtttggtgtaccacct
gagcacatagtggattacttggcactcatgggtgacaaggtggataacattcctggagtg
cctaaggtgggtgaaaaaaccgctaaggcactgattgcagggttaggctctttagaagat
gtctatagtcgcttagatgacgtggcgacgttggatttccgtggcgctaaatccatgaaa
gccaaattagaagagcacaaagagcaagcgtttttgtcgaaagagctggctacgatcaaa
actgatgtggaacttgagtggggcttgggcgatatcaaaattgatgagcccgacaataaa
aaactgttagagctttaccaagagtgcgagtttaagacttggattaaagagttatccaca
ggtgaggtggaggagccaaagcaacagcaactgcctgtggatagaagtttatacaccaac
ttatccacagaagaagctttacaagaatggttggataaactggataaggctgagctctat
gccatcgatactgagacgacctctttaaaatatatggaagcagaaatcgtcggtatcagt
ttggccgtggcaccgaacgaagcctgctatataccattggctcatgattatgctggggct
cctgagcaacttgatcgggattgggttctacagaaaatgaagcccttgttagaagatgag
acaccgaaaaaagtcggtcaaaatcttaagtacgatgctcatgttttgaaaaattatgac
atcgaattaaacggcatcgcccacgataccatgctggaaagctacgtgcttaacagtaca
gcgagtaagcacaatatggacgatctagccaagcactatcttggtcatgaatgcattgat
tttgagagcattgctggcaagggcgcgaagcaactaacctttaatcaaattccagtcgag
caagcgggagaatatgcagcagaagatgccgatatcactttgcgcttacaccaagtgctt
tggccgcaattagaagcggatgagtcattgctcacattgtacaagaaggttgaattgcct
ctagtgcaagtgcttactaacatggagtatgttggagcgtcagtgaatgctgacaaactg
catcagcaaagctccgagatcgaacagcgcctacaagaactggaacgcaaagcccatgac
attgctggcgaggttttcaatcttggctctaccaagcaattgcaggctattttcttcgag
aaattagagctgcctgtgatcaagaaaacacccaaaggtcagccttctacggcagaagaa
gtcctagtcgaattgagccatgattacgagttacccaaagtgattttggagcatcgtggc
ttagccaaactgaagaatacgtacaccgataaattgccattgatgatcaactcaaaaagc
cagcgagtgcatacctcgtatcatcaagccgtgacggcaacgggacgcttatcgtccagt
gaccctaacctacaaaacatccccattcgcaatgaagaaggccgaaaaatccgccaagct
tttgaagcaccagagggctataccttggttgcagcggactacagtcagatcgaattacgc
attatggcccacttgtcaggggataaaggattgctggatgcgttcaaaaatggaaaagat
atccacagggccactgccgcagaaatcatggaggtagacgaggcggatgtggataacgag
cagcgtcgtcgagccaaagcagttaactttggtttgatttatggcatgagtgcctttggc
ttagctcgacagctaggaataggtcgctcagaagcacaggaatacattgataaatacttt
gatcgctatccaggtgtgaaaaaatacatggaaagcacccgcgagttggcagcaaaacag
ggttatgtagaaaccctatttggtcggcgtttgtatttgccagagattaatagtcgaaat
gggatgcgtcgccaagcagccgaacgcacagcgattaacgcgccaatgcaaggcacagct
gcggatattattaagcgcgccatgattaagatgcatcagtggatacaagaaagcgctcat
gatgtacatatgatcatgcaagttcacgatgaacttatcttcgaagtaccagatggacag
ctggatgctgttagtgccgagataaaatccatcatggaggctgccgctgatctcgacgtg
cccctgctggtggatgtgggtcacggcgacaactggcagcaagcccactag
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