Bermanella marisrubri: HF888_01415
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Entry
HF888_01415 CDS
T06527
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
bmar
Bermanella marisrubri
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
bmar01002
]
HF888_01415
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
bmar01011
]
HF888_01415
Peptidases and inhibitors [BR:
bmar01002
]
Cysteine peptidases
Family C82
HF888_01415
Peptidoglycan biosynthesis and degradation proteins [BR:
bmar01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
HF888_01415
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
QIZ82972
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Position
complement(315538..317424)
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AA seq
628 aa
AA seq
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MDSLSIYYSDRHRSLKRPTKAGPTTTSAKKAHLTYTERKTGGSQNVITLGLVVSCFVLIS
VVLFISSTTRPVIAPLVAKESLEHWLYSAPNNVAGGASLRYREELEQVYRETQHQLIWMD
HYRLNSAGNALVTNLRHTASDEWKAYGFRISKLQTELGRLDNQPKHAAAIDVLLTDAYID
FARQVFNKELLPNTGELDHPSFRKVAAPPTTRVTSLDVISLLSQSLEQGKLHELVKQLVP
SHPGYERLGQELERYQDIAESGLWYPLEIENPLKAGDHHAQIPRLKWMLNAYGDYQKSAM
DWLVSQTPNSELDPLALERQYRKQPEHQVYRIDENTVRALKHYQKRNGLLPTGRLDQQTL
AQLNEPPYFIAQRIALNMKRWRYLPKELGEDYILVNMADFRLNYFAKGKRQLNMKVIIGK
EHLRTPVLAETISSVILAPEWNVPHRIAIRDIIPQAKRDPDYLRKHNFKVYEGWSMPPKE
VPLENLDFNGFQSRTNTYRLVQAPGDDNSLGNVKFVFPNDKSIYLHDTNHKELFARDMRA
LSSGCIRVEQPMALAKALLGRQNWDEQLISNVIERRYTRPVRLKDPVPVYLMYWTTWVNE
EGTLQVRRDVYNRDQINNQSHKLDSIVL
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggacagtctatccatctactattccgatcgtcatcgaagccttaaacgtccaactaaa
gctggacccacgacgacgagcgcaaaaaaggcacatcttacttacaccgagcgtaaaact
ggtggaagccaaaacgttattaccctaggactggtcgttagttgctttgtactcatcagc
gttgtgttgttcatcagcagtacaacacgtccagtcattgcacctttagtcgccaaagag
agcttggaacactggctttacagcgccccaaataatgtcgcgggcggcgcgagccttcgc
taccgagaagaattagaacaagtttatcgtgaaacccagcaccaattaatatggatggat
cactatcgcttaaattctgcgggcaacgcgctggtaaccaatctacgtcataccgctagc
gatgaatggaaagcttatggttttcgtatcagcaaattacaaacagaactgggacgcctc
gacaaccaacctaagcacgccgccgccattgatgtactcctaaccgacgcatacattgat
tttgcccgccaggttttcaataaagagctactgcctaacacaggtgagcttgatcatccg
tcctttagaaaagtggcagctccaccaacaacccgtgtcacttcactggatgttattagc
ttgcttagccaaagtcttgaacagggaaaattgcacgagttggttaagcagttagtccct
agccatccaggttatgagcgccttggccaagaattagaacgctatcaagacattgccgaa
agtggcctttggtaccccttagaaattgagaaccctctcaaagcgggagatcatcacgcg
caaatcccgcgcttgaaatggatgcttaatgcttatggcgactatcaaaaaagtgccatg
gattggttagtatcccaaacaccaaatagtgaacttgatccgctggcattagagcgtcaa
taccgcaaacaaccagaacatcaggtttatagaatcgatgaaaacactgtgcgtgccctc
aagcattatcagaagcgtaatggattgctaccaaccggccgcttagaccagcaaacactg
gctcagcttaatgagccgccttatttcattgcacagcgcatcgccctgaacatgaaacgt
tggcgttaccttccaaaggaactaggcgaagactatatcttggtaaatatggctgacttc
cgcttaaattacttcgcaaaagggaagcgtcaattgaacatgaaagtcatcattggcaaa
gagcatttgcgcacgccagtgttagcggaaaccattagttccgttatcttagcgcctgaa
tggaatgttcctcaccgtattgcgattcgcgatatcataccgcaagccaagcgtgaccca
gattacttgagaaaacataattttaaagtctacgaaggctggtcaatgccaccaaaagaa
gtccctcttgaaaacctagatttcaacggttttcagtctcgtacaaatacgtaccgatta
gtacaagcaccaggggatgataacagtcttggtaacgttaaatttgtatttcccaacgac
aagtctatttatttgcacgacaccaatcacaaagagctttttgcacgcgatatgcgagca
ctaagcagtggctgcatacgcgttgaacagcctatggcgttagcaaaagcgttgttagga
cgtcagaattgggatgagcagctgatcagtaatgtcatagagcgtcgctacacgcgccct
gttcggttaaaggacccagtaccagtctatctaatgtattggacgacatgggtaaacgaa
gaaggcacgctgcaggtacgccgcgatgtttataaccgtgaccaaatcaacaatcagagt
cataagctcgattcgattgttctgtaa
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