Bermanella marisrubri: HF888_02735
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Entry
HF888_02735 CDS
T06527
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bmar
Bermanella marisrubri
Pathway
bmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF888_02735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmar03019
]
HF888_02735
03400 DNA repair and recombination proteins [BR:
bmar03400
]
HF888_02735
Enzymes [BR:
bmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HF888_02735
Messenger RNA biogenesis [BR:
bmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HF888_02735
DNA repair and recombination proteins [BR:
bmar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HF888_02735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
ResIII
RecQ_Zn_bind
SWI2_SNF2
Thioredoxin_8
AAA_22
TniB
Rep_OBD
SNF2-rel_dom
CobN-Mg_chel
Motif
Other DBs
NCBI-ProteinID:
QIZ83212
LinkDB
All DBs
Position
complement(600312..602288)
Genome browser
AA seq
658 aa
AA seq
DB search
MDSLDSQQNTQFNSQLHGKLQANFGFNEFRPGQAQTINQLLNGHSSLAIFPTGSGKSLCY
QFTALQLPNLTLVVSPLLALMKDQVEFLKQKNIAAASLDSSLSQDEYRQVMQDVRNGSIK
ILMISVERFKNERFRQFIQTVPISMLVVDEAHCISEWGHNFRPDYLKLPSYRKDLNIPLT
LLLTATATKAVKRDMAEKFDIQPEHIVQTGFYRPNLDLSVLPVKQAEKLPTLVNQIRQQH
GSGIVYVTLQHSAETVASYLQQCGISATAYHAGFDSEKRQAIQNDFMQDKVQVIVATIAF
GMGIDKSNIRFVIHYDLPKSIENYSQEIGRAGRDGQPSNCITLANLDGLNTVENFVYGDT
PERSNIQTLIQHILDAANGSQWEMQTLALSKLCDIRALPLKTLLVQLEILGAIEPAYSYY
AEYRFKLLEEQANILQRFDERRQQVLKSIFNQTKFNRTWAVPDLHACFQSEQLERAKVLA
ALEYLHDQQLIQLESKQMTEVYHINTQALQDDALVTTLFNYFKDKEQKEIKRIAALVRFF
ELDQCLSQMLARYFDHQDVPQQCGHCSVCRGQIAKLEYSEPVQRPTDSDINNAVSELKQY
LNEQGLNDTSVDTVCRFLAGMTTPLFTQHKVKQLDGFGLCEQLRYRDLKETISRLDHL
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggattctctagactcacagcaaaatacgcagttcaattctcaattgcatgggaaacta
caagccaactttggctttaatgagtttcgccctgggcaagcgcaaaccattaatcaacta
cttaacggccatagctcgttggcaatctttccgaccggatctggcaaatctctgtgctat
caattcaccgcgctgcaattgccaaacctcacactagtagtctctcccctactggcttta
atgaaagaccaagtggaatttcttaaacagaaaaatattgctgcagccagtttagattct
agtttgagtcaggatgaatatcgccaagtgatgcaagacgtgcgcaatggttcgatcaag
attcttatgatcagtgtggagcgctttaaaaatgaacgctttcgccagttcattcaaact
gtacctatttccatgctggtagtggatgaagctcactgtatttccgaatgggggcataac
ttccgccccgattatttaaaactgcccagctaccgtaaagatctgaatattccgttaacg
ctattgcttaccgccaccgcaaccaaagcggtaaagcgcgatatggctgaaaagtttgat
atccagcctgaacatattgtgcaaacaggattctatcgaccgaatctggacctatctgta
ttgcccgtaaaacaagctgaaaaacttcccactctcgtcaatcaaataagacagcaacat
ggttccggtattgtctacgtgactttgcagcacagtgcagaaaccgttgcctcgtatttg
caacaatgcggaatatcagcgacggcctaccatgccggttttgatagcgaaaagcgccaa
gccatccagaacgattttatgcaagataaggtacaagtcattgtggcaacgattgccttt
ggtatgggcattgataaaagcaatattcgctttgtgattcactatgacttacctaaatcc
attgaaaattacagtcaagaaatcggccgcgctggacgtgatgggcagccatcaaactgt
attacattggccaatctcgatggcctcaatacggttgagaattttgtttatggagataca
cctgagcgatctaatattcaaactctgatccaacacatactcgatgccgccaacggcagc
cagtgggaaatgcaaaccttagcactttctaagctttgtgatattcgtgcattaccacta
aagaccttactcgttcaattggagatactgggcgccatagaacctgcgtacagctactac
gctgaatatcgatttaagctgcttgaagagcaagccaatatacttcaacgctttgatgag
cgtcgccagcaggtgttgaaaagtatcttcaatcagacgaagttcaatcgaacttgggcc
gtaccagacttgcatgcttgttttcaaagcgagcaactagaacgggcgaaagtattggct
gccttggaatacctgcatgaccagcaacttattcaattagaaagcaagcaaatgacggag
gtctatcatattaatactcaagctttgcaggatgatgcgcttgttacgacactttttaat
tactttaaagacaaagaacaaaaagaaataaaacgtattgcggcgttagtacgctttttc
gaattagatcagtgtcttagtcagatgctggctcgatattttgatcatcaagatgtgcca
cagcaatgtggacattgctcagtgtgtcgcggtcaaatagccaagcttgaatactccgag
cctgttcaacggccaacggatagtgacattaacaatgctgtatcagagctcaagcaatac
ctgaacgaacaaggactaaatgacaccagtgtcgatactgtctgccggtttttagcaggt
atgacgacaccgctttttactcaacataaagtcaaacaattagacggtttcggcttatgc
gaacagcttcgctatcgagatttaaaagagacgatttctagactcgatcatctatga
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