Bermanella marisrubri: HF888_07090
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Entry
HF888_07090 CDS
T06527
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmar
Bermanella marisrubri
Pathway
bmar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HF888_07090 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmar03400
]
HF888_07090 (mfd)
Enzymes [BR:
bmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HF888_07090 (mfd)
DNA repair and recombination proteins [BR:
bmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HF888_07090 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
UB2H
AAA_30
DUF4410
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QIZ84007
LinkDB
All DBs
Position
complement(1537138..1540569)
Genome browser
AA seq
1143 aa
AA seq
DB search
MSLTPPLHAGDLKTWGNIKGSALAHQLAVSASQYKGLTLVITNSSGESQRLTEEISYFFN
GDVISLPDWETLPYDYFSPHQDIISERLSTLANLPKSERAIAVIPALSLQLRLPPVSYIL
GHSFSLSVGETLDMDKLRQQLVSAGYQSVDGVYEHGEFCVRGAILDIFPMGSETPFRIEL
FDDEIESIRWFNPETQRSTETTDKIELLPAKEVPLDKPGIRCFKSRWFEFFDSDPKESPL
YTDVIKQIAPGGIEYYMPLFFDETATLFDYLPQQTQVIFPDSLQDQIQHNWQDIENRYED
RRHDIRQPVLAPKEIYLNDNDIFAKFKDLGRVRFSANTVEEAQGKENYSSPELPSIQVDH
KKERPLAKLEQFLNETHQSVVFSVESAGRREALIELLQRIKVSPQVIDEWQDIIENEFEV
AITTAPLEDSFFCHDQNLWLVSENALFGERIRQSRRQKQEKDQSENVIRNLTELTPGAAV
VHIDHGVGRYRGLETLDAGGEINEFVTLEYAGGAKLYVPVASLHLISRYSGADTEIAPLH
KLGTDKWSAQRRKALEKIRDTAAELLEVYAKREAKPGHGFSYPRDEYELFAADFPFEETA
DQKQAINAVVTDMMKANPMDRLVCGDVGFGKTEVALRAAFLAAQNGKQVAVLVPTTLLAQ
QHFETFRDRFADWPIKVEGISRFKTGANKTAALKGLEDGTTDIVVGTHKLLQKDVKFKDL
GLLIIDEEHRFGVQQKERIKALRADVDILTMTATPIPRTLNMAMSGVRDLSIIATPPARR
LAVKTFVKKWDENLVKEAVLREILRGGQVYYLHNEVKTIEKTAEDLAKLIPDARIGVAHG
QMTERQLESVMSDFYHKRFNVLVCTTIVETGIDVPNANTIVLERADKFGLAQLHQLRGRV
GRSHHQAYAYLMTPIEKKITKDAEKRLDAISHAQDLGAGFMLATHDLEIRGAGELLGEEQ
SGHIQNVGFSLYMELLERAVEAIKQGKELSLDSPVETGAEINLRIPALIPDDYLPDVHNR
LILYKRISNAKNEEDLKELQVEMIDRFGLLPEQVKFLFRVTELKFELDKLGIVKLDAGES
AGRIEFGSDTKIDPYTMVRMVQTKPASFKLDGANALKFYFDMPDAESRFKQVAEVLTLLS
GKS
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttaccccgccattacatgcaggtgatctaaaaacctggggaaatattaaaggc
agcgcgctagcccatcagctagctgttagcgcaagccaatacaaagggctgacacttgtt
ataaccaacagtagtggcgagagccaacgacttacggaagaaattagctatttcttcaat
ggcgatgtcatcagcctgccagattgggaaacacttccatatgactatttttcgcctcat
caagatattatcagtgaacgactaagcactcttgccaatctacctaaatctgagcgcgct
atcgccgtcattccggcactttcattacagttacgcttaccacccgtgagctatattctc
ggccacagcttcagcttaagcgttggcgagaccctagatatggataagctgagacagcag
ttggtatcagctggttatcaaagcgtggacggggtttatgaacatggcgaattctgtgtg
cgtggtgcaatactcgatatttttcccatggggtctgaaacaccttttcgtattgagctg
tttgacgacgagatagaaagtattcgctggttcaatccagaaacacaacgctccaccgaa
accactgacaaaatcgaactactgccagcgaaagaagtaccgctcgataaacccggtatt
cgctgcttcaaaagtcgctggtttgagttctttgacagcgatcctaaagagagccctctc
tacacggatgttattaagcaaattgctccaggtggcatcgaatattatatgcccctgttt
ttcgatgaaaccgcaacgctatttgactatttgccgcagcaaacacaagttatcttcccc
gatagtttgcaagaccaaattcagcacaactggcaagatatcgaaaatcgctacgaagat
cgccgtcatgacattcgccagccggttctcgcgccgaaagaaatctacctaaatgacaat
gatatctttgccaaattcaaagacttgggccgtgtacgttttagcgcaaacacggtagaa
gaagcacaaggcaaagaaaactactcaagcccagaacttccatccattcaagtcgaccat
aaaaaagaaagaccactggccaaactagagcagttcttaaatgaaacccatcagtcagtg
gtcttcagtgtcgaaagtgccggccgacgtgaagcactaattgagcttttgcagaggata
aaagtatccccgcaagtcatcgatgaatggcaagacattattgaaaacgaattcgaagtg
gccattacgacggcgccactggaagacagctttttctgccatgatcaaaatctttggcta
gttagcgaaaacgcgctttttggtgaacgtattcgccaaagccgacgccaaaaacaagaa
aaagaccaaagcgaaaatgttattcgcaatcttaccgaactgactccgggtgcggccgtc
gtgcatattgaccatggtgttggtcgctatagaggtcttgaaacccttgacgccggtgga
gaaataaacgaattcgtcaccttagaatacgctggcggtgccaaactttatgtccctgta
gcatcccttcatttaatcagccgctacagtggagctgatacagaaatagctccgctacac
aaactaggcacagataaatggagtgctcaacgtcgcaaagctttagagaaaattcgagat
acagcggcggagcttttagaggtatatgccaaacgcgaagcgaaaccaggccatggtttc
agttacccgcgtgacgaatacgaactgttcgctgccgacttcccatttgaagaaaccgca
gaccaaaagcaagccatcaatgccgttgttaccgacatgatgaaagcaaaccctatggac
cgcttggtatgtggtgatgtaggttttggtaaaactgaggtcgctcttcgtgcagcgttt
ttggcagcacaaaatggcaagcaagtagccgttctcgtgcccaccaccctgcttgctcaa
cagcattttgaaacttttcgcgatcgcttcgcggattggcctatcaaagtagagggtatt
tctcgttttaaaacgggtgccaacaaaacagccgccttaaaaggcctcgaagacggtaca
acagatattgttgttggtacgcataagctactgcaaaaagatgtgaaatttaaagacctt
ggcttactaatcatcgacgaggagcaccgctttggcgtgcagcaaaaagaacgcattaaa
gctcttcgtgcggacgtggacatacttaccatgaccgcaacgccaatacctagaacactg
aatatggccatgtcaggtgttcgcgatctttcaataattgccaccccgcctgctcgacgt
ttggctgttaaaacgtttgtaaaaaaatgggatgaaaacctagtaaaagaagctgtgcta
cgtgaaatattgcgaggcggtcaagtctattaccttcataacgaagttaaaaccattgaa
aaaaccgctgaagatttggccaaactcatacccgatgcgcgcattggcgtagcacatggg
caaatgactgagcgacagctcgagagcgtcatgagcgacttttatcataagcgctttaat
gttttagtctgtacgaccattgttgaaactggcatcgatgtgcccaatgcaaacaccatt
gtacttgagcgtgccgataagtttggtttagcccagcttcaccagttgcgtggtcgcgta
ggccgcagccatcatcaagcttacgcgtatttgatgacgcctatcgaaaagaaaatcacc
aaggacgccgagaaacgcttggacgcaatatcgcacgcgcaagacttgggggcaggcttt
atgcttgccacccatgacttggaaatccgcggtgctggtgaactcttaggtgaagagcaa
agcggtcacattcaaaacgtgggctttagcctatatatggaattattagagcgtgccgta
gaggcaatcaaacaaggcaaggagctcagccttgatagtcctgttgagacaggtgcagaa
attaatttacgcattccagcactgattcctgatgactacttgcccgacgtccacaaccgt
ctcattttatataagcgcatcagcaacgctaaaaacgaagaagatctcaaagagctgcaa
gttgagatgattgatcgcttcggcctactgccagagcaagtaaaattcttattccgtgtg
accgaattaaaatttgagcttgataaacttggcattgtgaagctggatgcgggagaatca
gctgggcgaattgaatttggtagtgataccaagattgatccctataccatggttcgcatg
gtacaaaccaaaccagcaagttttaagttggatggcgcgaacgctttgaaattttatttt
gatatgccagatgctgaatctcgcttcaagcaagtggcagaagtgcttacattattatca
ggaaagtcataa
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