Bermanella marisrubri: HF888_09075
Help
Entry
HF888_09075 CDS
T06527
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bmar
Bermanella marisrubri
Pathway
bmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF888_09075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmar03019
]
HF888_09075
Enzymes [BR:
bmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HF888_09075
Messenger RNA biogenesis [BR:
bmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HF888_09075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
HI1480
CMS1
AAA_22
COMPASS-Shg1
PBECR2
Gag_p24
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QIZ84372
LinkDB
All DBs
Position
1978334..1979707
Genome browser
AA seq
457 aa
AA seq
DB search
MQFTDLALAEPIVKAIAEQGYTSPTPIQAQGIPAVLSGRDLLAAAQTGTGKTAGFTLPIL
QKLLDAPKGVKPNQARVLVLTPTRELAAQVQDNVATYSKYTKIRSEVVFGGVKINPQMQR
LRRGVDILVATPGRLLDLHNQNAIHFDQLDTLILDEADRMLDMGFINDIRKIMRLLPKKR
QNLMFSATFSDKIRALAKTIVENPVEVSVTPKNTTAKKVRQSIIAVDKKQKINLLIDLLA
KEKWHQVLVFSRTKHGANKIAKQLSDADIPAAAIHGNKSQGARTRALADFKSNDIQVLVA
TDIAARGIDIDQLPHVINFDLPNVAENYVHRIGRTARAGSDGDALSFVSIDEIDLLADIQ
NFIGEPIERLDYPGFAPSKPLPELKLNLKPKKIKKPKKPKQASTDSKAAPKQKKKPANKS
ASAKKAKTTANSKPKRQNRKPSDQKKSPIKRPSQSPN
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttactgatttggctcttgcggagcccatagttaaagccatagccgagcaaggc
tatacttcccctacccctattcaagctcaaggcataccggccgtattatctggtcgagat
ctattggcagccgctcaaacgggcacagggaaaacagcaggcttcaccctaccaattttg
caaaagttgctagacgcgccaaaaggcgtaaaaccgaatcaagctcgggttttagtgttg
acgccaacacgcgaattagccgcacaagttcaagacaatgttgccacctactcgaaatac
accaagattcgctcagaggtggtatttggtggcgtgaagattaacccacaaatgcagaga
cttcgtcgcggcgtggatattcttgttgctacaccaggtcgactactggatttgcacaac
caaaatgccatccatttcgatcaactggatacactgatacttgatgaagctgaccgcatg
ttggacatgggctttatcaacgacattcgcaagattatgcgattactacccaaaaagcgt
cagaatctcatgttctccgcaacattctctgacaagattcgcgctctggcgaaaaccatt
gtcgaaaacccagttgaagtatcagtcacacctaaaaacacgaccgcaaaaaaagtacgc
caaagcattattgcggttgataaaaagcagaaaatcaatctattaatagatttactggca
aaagaaaaatggcaccaggtattggtgttcagtcgcaccaaacacggcgccaacaagatc
gccaaacaactaagcgacgctgacattccagccgctgcgattcatggcaataaaagccaa
ggcgctcgaacccgagcactagccgatttcaaaagcaatgacattcaagtattggttgct
actgacattgctgcgcgaggtatagatatcgaccagctaccacacgtaatcaactttgat
ttacctaacgtagctgaaaactatgtacatcgaatcggtcgtactgcgcgcgcaggaagt
gatggcgatgcgctttcgtttgtgtcgatagatgaaattgatttactagcagacattcag
aacttcattggcgaaccaattgaacgtctcgattacccgggatttgcacctagcaaacca
ctacccgaattaaagcttaacttaaaacctaaaaagattaaaaaaccgaaaaagccaaaa
caagcctctaccgattctaaggcagcaccaaagcagaagaaaaaacctgcaaacaaatca
gcgagcgccaaaaaggcgaaaacaactgcgaactccaaacctaaacgccagaatcgtaaa
ccaagcgatcagaaaaagtctccgataaagcgaccatcccaatcaccaaattag
DBGET
integrated database retrieval system
