Bermanella marisrubri: HF888_10425
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Entry
HF888_10425 CDS
T06527
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
bmar
Bermanella marisrubri
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bmar03000
]
HF888_10425
Transcription factors [BR:
bmar03000
]
Prokaryotic type
Helix-turn-helix
Other families
HF888_10425
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
PAS
PAS_9
AAA_5
PAS_4
HTH_8
Mg_chelatase
AAA_2
AAA
PAS_8
PAS_3
AAA_16
DUF815
Diguanyl_cycl_sensor
PAS_10
PAS_7
SpoVT_C
Motif
Other DBs
NCBI-ProteinID:
QIZ84605
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Position
2251506..2252945
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AA seq
479 aa
AA seq
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MSPTKSPINQVSEHQRLLLESMSEGVYGLDENGLATFVNLAAERLTGWEANDLIGKSIHD
FHHHSHADGRHYPQADCPIYQCLQDGITRTKENEVFWRKDGTSFAVEYSATPILQEGSIQ
GAIVVFKNISERKRIESALQKALTENRFLKEKLEAENSYLQSEIESNYQSDIIGQSPAIE
HLQTQISLSAPTSANILIQGESGTGKELVARAIHQQSERQAQTLVKLNCGAIPEGLVDSE
LFGHEKGAFTGAVKQRIGRFELANKGTLFLDEVSELPLDAQVKLLRVLQEGEFERVGGNK
TIRVDVRIIAASNKNLEQAVHDGSFRLDLYYRLNVFSVQVPPLRERKSDLPILSHFFAKK
ACADMGKSFKGLHMPSLKWMSHYQWPGNIRELSNWIEHNAILHTGGLFHIHPMAHARHDH
SVEHDNESIVSLAEAEKQHIQKALLHCNGRIAGANGAAQLLQLPASTLRSKMKKLGIYG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtcaccaacgaaatcaccaattaatcaggtttcagaacaccagcgtctactactggaa
tccatgtccgaaggcgtttatgggctcgacgaaaatggtctagcaacctttgttaatttg
gctgctgaacgcttaaccggttgggaggcgaatgacctcataggtaaaagcattcacgat
tttcaccaccatagccatgctgatggccgtcactatcctcaagcggattgccccatttat
cagtgtttacaggatggcattacgcgcactaaagaaaacgaagtattttggcggaaagat
ggcaccagctttgcggtggaatacagtgctactcccattcttcaagaaggctcaatacaa
ggtgccattgtcgtcttcaaaaatatcagcgagaggaagcgtattgagtctgcattacaa
aaggcgctgacagaaaatcgttttctgaaagaaaagctcgaagcagaaaattcctatcta
caatcggaaatagaatccaattatcaatcagacataattggacaaagtccagcaattgaa
cacttgcaaacgcaaatatcattatctgcaccaaccagtgctaacatcttaattcaaggc
gaaagcggtacaggaaaagaattggtggccagagccattcatcaacaaagtgagcgccaa
gctcaaactctggtaaaactcaattgtggcgctatccctgaaggcctcgttgatagcgag
ctttttggtcacgaaaaaggcgcttttacgggtgctgtaaaacaacgtattggccgtttc
gagttggctaacaaagggactttatttttggatgaggtcagtgaattgcccttggacgca
caagtaaaacttttgcgagttttacaagagggtgaatttgaacgagtaggtgggaataaa
accatcagagtggatgtacgcatcatcgctgcctcaaacaaaaatcttgagcaagcggta
catgatggtagctttcgcttagacctatactaccgcttaaatgtcttttctgttcaagta
ccgccattgagagaacgaaaaagtgatttaccgattttaagtcatttctttgctaagaaa
gcctgcgcggatatgggtaaatcctttaaaggtttacacatgccttcactaaaatggatg
agtcactaccaatggccgggtaacattcgggaattatccaattggatcgagcacaatgcc
attttacatactggcggattgtttcatatccaccccatggctcacgctcgtcatgatcac
agtgttgagcatgataatgaatctattgtcagcttggcagaagcagaaaaacaacacatt
caaaaagctctgctgcattgtaatggccgcattgccggtgccaatggtgcagctcaattg
ttgcaactcccggctagcacgttgcgctcgaaaatgaaaaaactcgggatttatggctaa
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