Bermanella marisrubri: HF888_11220
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Entry
HF888_11220 CDS
T06527
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bmar
Bermanella marisrubri
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bmar03016
]
HF888_11220 (rnd)
Enzymes [BR:
bmar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
HF888_11220 (rnd)
Transfer RNA biogenesis [BR:
bmar03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HF888_11220 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
QIZ84753
LinkDB
All DBs
Position
complement(2417475..2418623)
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AA seq
382 aa
AA seq
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MKYIDTHIDLASACEHWNTCNRIALDSEFMRVDTFYPKLALIQINDGSETYLVDPVRINR
AHRGEPREEVWGPLIEVLSNQNVVKVLHSPSEDFDAFYSNLGVVPSPIIDTQWAAAMASI
DGIMGYQKLVKQLLDIDLEKGATRSDWLQRPLTDEQIHYAADDVEHLLEITKRLETQLVT
QGRWTWLLEDCERMVEDWLIGQEQGYGIERIKKAWMLKPKQLFTLEKLLAWRERRCRTVN
KPRGHILNDSLLVDLAMRLPTSTKQLSSIKGIRQPTVRKDGEQIVDIIQRCKESESSQWP
ERLPRPFNQVAGEWFKDMRDLVQKKAKELDVPPEMVARKKSLEGMLRKAYPNGPIEIPRS
LQGWREEVIATPLVEKLKALVN
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatatcgatacccacatagacttagccagcgcttgtgagcattggaatacctgc
aatcgcatagcgttagatagcgagtttatgcgtgtggataccttttatccaaagcttgcg
ctgattcaaattaacgatggatccgagacctatcttgtggatcccgtgagaattaatcgc
gctcatcgaggagagccaagagaagaggtgtggggaccactgattgaggtgcttagtaat
caaaatgtggttaaagtcctgcatagcccaagtgaagattttgacgctttctattcaaat
ttaggagttgtacccagccccattatcgatactcaatgggctgccgcaatggccagtata
gatggcattatgggttatcaaaaactggtaaaacaattgctcgatattgatctcgaaaaa
ggcgcaacacggagcgactggctacaaagacctctaacggatgagcaaattcattatgcc
gcagatgatgttgagcatctcttggaaatcaccaaacgattagaaacccagctagtaacg
caaggccgttggacttggttgttagaagactgtgaaagaatggtcgaagattggcttatc
ggacaagaacaaggctatggcatcgagcgcattaaaaaagcgtggatgctcaaacccaag
caattattcacactagagaaattgctggcttggcgtgaacgccgttgtcgtaccgttaat
aaacctcgtggacatatccttaatgattcattgctagtggatttggccatgcggttgcca
acgtcaacaaaacagctatcttccataaagggtattcgccagccaacagtgcgcaaagac
ggtgagcaaatagtcgatattattcagcgctgcaaagaatccgaatccagtcagtggccc
gaacgtttaccaaggccattcaatcaggtggccggagagtggttcaaagacatgcgcgat
cttgtgcagaaaaaggcaaaagaattggatgtaccgccagaaatggtagcgcgcaaaaag
tccttagagggaatgctgcgtaaagcctatcccaatggacccatagaaattccccgttca
ctgcaaggatggcgtgaagaggtgatcgccacacccttagtggaaaaactaaaagcatta
gtgaactag
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