Bermanella marisrubri: HF888_11665
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Entry
HF888_11665 CDS
T06527
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
bmar
Bermanella marisrubri
Pathway
bmar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HF888_11665 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmar03400
]
HF888_11665 (recD)
Enzymes [BR:
bmar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HF888_11665 (recD)
DNA repair and recombination proteins [BR:
bmar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HF888_11665 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
RecD_N
Helicase_RecD
SH3_13
UvrD-helicase
AAA_22
SLFN-g3_helicase
UvrD_C
nSTAND3
PhoH
AAA_16
NTPase_1
CbiA
AAA_28
TrwB_AAD_bind
TraI_hel_assoc_N
MukB
Motif
Other DBs
NCBI-ProteinID:
QIZ84837
LinkDB
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Position
complement(2514477..2516339)
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AA seq
620 aa
AA seq
DB search
MTEYQLNRFLEQHGQAFREIDKQFAKFCLDLSKDDHLAIIALLVSDQLGQGNVCFDISQP
HSILSESELSELCHLAKQANSNDQNFPLVFEGSRIYLQRYHQYECFVEQAIRSRCQQYEN
DLEVDSLLNMINNLFPPNYSKQEIDWQKVAVSVAVQSAFTVISGGPGTGKTTTVIKLLAL
LIEQYKVKGRQPIIRLAAPTGKAAMRLTESIGQAKHRLQVDEHVKDAIPEEASTLHRLLK
RNREGDFYFNQMNPLHLDILVVDEASMIDLPMMAKLLAALPKHGQLVLLGDKDQLSSVEA
GSVLADICDSGTRHGFSESQLKLINQLTDIPLDQLKQNVAELHGAEIRNHVCHLRKSHRF
SDHSGIAALARAANNGDVNRWQQIFEGDFSDLNFFDLTESNRQTLILQSAKLYSEYQNLI
ASDDNSDAVARRVHEVFNRYRILCAVKEGELGVAGINQSLEQALGYQETWYAGRPIMIQQ
NDYGLNLYNGDVGIVLPRLIDGKTQLRAAFLNADSEIRWLQPARLPQHETVYAMTVHKSQ
GSEFEHCALVLPEYPAPVLTKELLYTGITRAKARLTLLARDKLIAYTLRNQVQRASGLRD
RLWTVEKAEFSPETGQFSLF
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgactgaatatcaactgaatcgatttttagaacaacatggtcaggcgtttcgcgagata
gataagcaatttgcaaagttctgcctagatttaagcaaagatgatcacctcgctattatt
gcgctgctagtcagtgatcaactagggcagggtaatgtgtgttttgatatctcgcagccc
cattcaattttaagtgagtcagagctgagcgaattatgccacttggcaaagcaagctaat
agcaatgaccaaaatttcccccttgtatttgaaggctcgcgtatatacttgcagcgctat
catcaatacgagtgtttcgtagagcaggccattcggtctcgctgccagcaatatgagaat
gatcttgaagtcgacagcctcctcaacatgataaataacttgtttccgccaaattattca
aaacaagaaattgattggcaaaaagttgctgtaagtgtcgcagtgcaaagtgcttttacg
gtaatcagcggtggaccaggtactggtaaaaccaccacagtaatcaaattattagctttg
ttaattgagcaatacaaagtgaagggtcgtcaaccaatcataagactggccgcccccaca
ggaaaagcagccatgcgtttgactgaatctattgggcaagcaaaacatcgattgcaagtg
gatgagcatgttaaagacgccattcctgaagaagcgtccaccttacatcgtttgctaaag
cgcaaccgagagggagacttttattttaatcaaatgaatcctctacatttagatatcttg
gttgtggatgaggcttccatgatcgatctaccgatgatggcaaaattattagcggcgttg
ccaaaacatggtcaactggttttgttgggcgacaaggatcagttgtcgtcggtagaggcg
ggcagtgtattggctgatatttgtgatagcggcacgcggcatggcttcagtgaatcacaa
ctaaaattaatcaatcaattgacggatattcctttagatcaacttaagcaaaatgttgcg
gagttgcatggcgctgagattcgtaaccatgtatgccatttgcgcaagagccaccgattc
tctgatcacagtggtattgcagcattggcccgtgccgctaataacggtgatgtgaatcga
tggcagcagattttcgaaggcgatttttctgatcttaactttttcgatttaacagaaagc
aatagacaaacgctgattctacaaagtgctaaactatattcagaatatcagaaccttatt
gcgagtgacgataactctgatgcagtagcaaggagagttcacgaggtctttaatcgatat
cgtatattgtgtgccgtgaaagagggagagctgggagttgctggaatcaatcagtcgtta
gagcaggctttgggatatcaggagacttggtatgctgggcgtcccattatgatccaacaa
aacgactatggtttgaatttgtataacggtgatgtgggtattgttttaccccgtttgatt
gacggtaaaacacaactaagggctgcgttcctgaacgcagatagtgagattcgttggttg
cagcctgctcgactacctcagcatgaaacggtttacgcgatgaccgtacataaaagccaa
ggcagcgagtttgagcattgtgccctggtcttaccagaatatccggcccccgtgttaact
aaagagttactctataccggaatcacacgtgccaaggctcgtttaaccctacttgctcgt
gataaactgatcgcttataccttacgtaatcaagtacaaagagccagtggcttgcgagat
cgtctgtggacggtagaaaaagccgagttttcacccgaaacgggacagttttcgttgttt
taa
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