Bermanella marisrubri: HF888_11670
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Entry
HF888_11670 CDS
T06527
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
bmar
Bermanella marisrubri
Pathway
bmar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HF888_11670 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmar03400
]
HF888_11670 (recB)
Enzymes [BR:
bmar01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HF888_11670 (recB)
DNA repair and recombination proteins [BR:
bmar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HF888_11670 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
AAA_30
ResIII
AAA_22
Pre_tape_measure
Motif
Other DBs
NCBI-ProteinID:
QIZ84838
LinkDB
All DBs
Position
complement(2516332..2519886)
Genome browser
AA seq
1184 aa
AA seq
DB search
MSPQKLSLLDAPLKGISLIEASAGTGKTFTIAALYLRLVLGHGCNPISPENILVVTFTKA
ATEELRGRIRNRLRQAYNAIQTQDESLDPFVFSLLKELDHTSALERLKDAVQIMDIAAIY
TIHGFAQKVLSQYSVESHVDDEFELILDQQEIEMTAVNDVWRKFVYPLSEAELDIVLDAW
GSPSVLLRDVSTLVRRDVEFKDSNIKNLQDIDVAHKRFKDAFDKFCQDWQDQGQAFFNAI
YDNEYASKSFTNHLSRRKQHLDDFTSGAYVKDIEKYIGYFTESGIKKSVTKKGEPTDHEM
ILSFTKMHAALLQWQEQKQQATLLWKIRFTEAIRTRLDELKQAQSVLCADDLLKQVLRSL
GSSESLCTLLCQQFPMAMVDEFQDTDSTQYRVFSKLYSETPEETGFFMIGDPKQAIYKFR
GADVFTYIQAKTEVEREFSLQDNYRSSPSLVSAVNALFQCHDRPFIFDDSIPFYPVGAAS
KSQLIQSRDIDNSACVFQTFDIDSDSGIEDIRTEVAHGVAEQVSVLLSSGLEQSTKVFDS
DLDDYRDISSRDIAILVRSAHQARLVKQALDERGVAAVFKGQESLYNSAEALAVYELLNS
LHSLSEQSYRNALANPVWMLSLDQLATHLQHEVCWEEELELMYECKRIWIKQGIMPMLMH
WLHSRGLPQQWFALTDGERRITNYLHMAELLQEQASRLQGMQGLLTWFEHKLQNTYQSEE
AQLRLESDENLVSIVTVHSSKGLEYPVVFLPYAWSMSKQVDVIYFDEITQSLCCDLEDVH
KDVRLKEQLAEEVRLLYVGVTRASSQLYVTVPTHCDNKKINSTLLASPLFHVLCGSNENK
VEAAPADQLANAISTLEKKSEQGVFAQQVLPYELTSFKAPDPEGDWQTTQFEGKIKQPWF
MSSFSSLVRGLHVPHHQRFNFDEIDDDLIIPEVPLDKDILNPFTFPKGAHAGNFLHNLFE
DIDFTRPMIDQVSTVQELLMRYGFEEKWLETVLEWSQKILHAPLQDQTLDKPISLSDLQP
DQKSVEMEFYFPVNGLSCSKFNALLRKYPVLGTVQQVQDLDFDFLQGMLKGFIDLTFECQ
GRYYVLDYKSNFLGDELTHYHRNAMTQAMAEHRYDVQLVLYTLALHRLLKLTLPNYNYDE
HMGGGFYLFLRGISGESQYGQFYHKPNRLLIEALDAMISGDNHD
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgagtccacaaaagctcagtttactagatgcgcctctcaaaggtatttccttaattgaa
gccagtgcaggtacgggtaaaacctttaccattgccgcattgtatcttcgcttagtgtta
ggtcatggatgtaacccaataagtccagagaatattttagttgttacctttacgaaagct
gcaacggaagagttaagaggacgtattcggaatcgattgcgtcaagcttataatgcaatt
caaactcaagacgagtccttggatccttttgtcttttctctacttaaagagcttgatcac
actagtgcgcttgagcgattaaaggatgcagtacaaattatggatatcgctgctatctat
accattcatggttttgctcaaaaggtgttgtctcagtatagcgtggagagtcacgtagac
gatgagtttgaattgatccttgatcagcaagaaattgagatgacagccgttaatgatgtc
tggcgaaagtttgtatatccattgtcagaagctgagttagatatcgtactcgacgcatgg
ggcagtccgagtgtgctattaagggatgtaagtacacttgtacggcgcgatgtagagttt
aaagatagcaatataaaaaacttacaggatatcgatgtcgcacataagcgtttcaaagat
gctttcgataaattttgtcaggattggcaagatcaaggccaagcattctttaatgctatt
tatgataatgaatatgcgagtaagtctttcacaaatcacttgagtcgcagaaagcagcac
ttggatgacttcacctctggagcgtatgtaaaagacattgaaaaatacattggctacttt
actgaatcgggtatcaagaagtccgtaactaagaaaggtgagcccaccgatcatgagatg
atattgtctttcactaaaatgcacgctgcacttcttcaatggcaagagcaaaaacagcaa
gccactttactatggaagatacgattcactgaagctattcgtactcgattagatgaactg
aaacaagcgcagtcggttttatgcgcagacgatttgctgaaacaggttttacgctctttg
ggcagcagtgaaagcttgtgtacgttgttgtgtcaacagtttccgatggctatggtcgat
gagtttcaagatacagatagcacccaatatcgagttttttcaaagttatattcagagaca
cctgaggaaacgggattttttatgatcggcgatcccaaacaagccatctataaattccga
ggtgctgacgtttttacttatatacaggcaaaaactgaggtagagcgggaattcagctta
caggataattatcgatcttctccaagtctcgtgtccgccgtgaatgcactttttcaatgt
catgatcgaccattcatatttgacgatagtatcccgttctatcctgttggagcggcttca
aagtcccagctaattcaatcaagagatattgataacagtgcatgtgtctttcaaaccttt
gatatcgactctgactctggaatcgaagatatccgtactgaagtggcgcatggtgtggcg
gaacaagtaagtgtgctattgagttctggtttagagcaatcgacaaaagttttcgattct
gatctcgatgattaccgagatattagtagtcgcgatattgcaatcctagtgcgtagtgcc
catcaagcaaggttggtgaaacaggcattggatgagcgcggtgtggcagccgtatttaaa
ggtcaagagagtctttataacagtgctgaagcgttagcagtatatgaattattgaatagt
ttgcattctttgagtgagcagtcttaccgcaatgcattggccaatcctgtgtggatgcta
agcctagatcagttggccacgcatcttcagcatgaagtctgttgggaagaagagcttgaa
ttaatgtacgaatgcaagcggatttggataaagcagggcatcatgcccatgttaatgcat
tggttacatagtcgagggttgccgcaacaatggtttgcattgacagacggtgagcgaaga
attaccaattatttgcacatggctgaattgctgcaagaacaagcttctcgtttacaaggt
atgcagggattgctgacttggtttgagcataaattgcaaaacacttatcaaagcgaagaa
gcgcaactacgtttagaaagtgatgaaaatctagtgagcatagtgacggttcacagctca
aaggggctggagtatccggtggtattcttgccctatgcatggtccatgagcaagcaagtt
gacgtgatatattttgatgagataactcaatccctatgctgcgaccttgaggatgtgcat
aaggatgtacgcttaaaagaacagttggctgaagaagtacgtttattatacgtaggtgta
actcgtgcctctagtcagctgtatgtaactgtaccgacacactgtgataacaaaaaaata
aatagtaccttattagcgagtcccttgttccatgtgttatgcggcagtaatgaaaataaa
gtagaagccgcgcctgcagatcagttagcaaacgcaattagcacgttagaaaaaaaatca
gaacagggggtttttgcccaacaggtgcttccctatgaattgacaagttttaaagcaccg
gatcctgaaggtgattggcaaaccactcagtttgaaggaaaaatcaaacagccatggttt
atgtcgagcttctcatctttagttcgtggtttacatgtacctcatcaccagagatttaat
tttgatgaaatcgatgatgatttaatcattcctgaagtgcctctggataaagatatatta
aatccgtttacttttcctaaaggtgctcatgccggtaactttttacataacctatttgaa
gatatcgattttacacgacctatgatcgatcaggtttctacggtgcaagaactgttaatg
cgctatggctttgaagaaaagtggttagaaacggtacttgagtggagccaaaaaattctg
catgcacctttgcaggaccaaaccttagataaaccgatttctttgtccgatcttcaacct
gatcaaaaaagtgtagaaatggaattctatttcccagtaaatggtttgtcttgttctaag
tttaatgcattgctgcggaagtaccctgtgttgggcacggtgcaacaagtacaggatttg
gattttgattttcttcagggcatgctaaaaggctttattgacctcacttttgagtgccaa
ggccgctactatgtattggattacaagtctaattttttgggggatgaattaactcactac
catcgaaatgctatgacacaagcaatggcagaacatcgatatgatgtacagctcgtttta
tacaccttggcgcttcatcgattattaaagctaaccctgccaaattataattatgatgag
cacatgggtggtgggttttatttatttttaagagggatatctggtgagtctcagtatggt
caattttatcataagcctaatagactcctaatagaggctttagatgcaatgatttcagga
gataatcatgactga
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