Bermanella marisrubri: HF888_12860
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Entry
HF888_12860 CDS
T06527
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bmar
Bermanella marisrubri
Pathway
bmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HF888_12860 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmar03019
]
HF888_12860 (pnp)
03016 Transfer RNA biogenesis [BR:
bmar03016
]
HF888_12860 (pnp)
Enzymes [BR:
bmar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HF888_12860 (pnp)
Messenger RNA biogenesis [BR:
bmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HF888_12860 (pnp)
Transfer RNA biogenesis [BR:
bmar03016
]
Prokaryotic type
tRNA degradation factors
HF888_12860 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_RRP5
KH_NusA_2nd
OB_RRP5_4th
KH_2
S1_2
KH-I_KHDC4-BBP
DUF2711
Motif
Other DBs
NCBI-ProteinID:
QIZ85058
LinkDB
All DBs
Position
complement(2758771..2760867)
Genome browser
AA seq
698 aa
AA seq
DB search
MLNLTPVTKTFQFGNQEVTLETQRIARQASGAVLVTMGEIQVLATVVGKKETKPGQDFFP
LTVNYQEKYYAAGKIPGGFIKRENRPSEKETLTSRLIDRPIRPLFPEGYMNEVQVVLTVV
SADKENDPDIAAMIGASAALAISGIPFDGPIGAARVGYDAENGYVLNPTYAQLETSLLDM
VVAGTEDAVLMVESEAKELSEDQMLGGVLFAHQEFQVAVNAVKEFAAAVGTERWDWQAPE
IDTELYGKMKEVAFADLTAAYQIKDKLARQDAVDAANTKLKEALLVDTEEESNAEELSKL
FKKLQKEVVRERILSNEPRIDGRDNKTVRDLNIQTDVLKGTHGSALFTRGETQSIGTVTL
GSTRDAQVVEFLHEVQKDNFLFHYNFPPYSVGECGRMGAPGRREVGHGRLARRGVQAMMP
SLEDFPYTVRVVSEITESNGSSSMASVCSASLALMDAGVPIKAPVAGIAMGLVKEGERFS
VLTDILGDEDHLGDMDFKVAGSEAGITALQMDIKIQGITEQIMEIALEQALDARMTILKQ
MNEVIAEPRSEMPSNAPTYLTVKIPADKIAEAIGKGGATIRGITEETGADVDISEEGVIS
IFALTKDAAEKAKGMFEAVTAEAEVGTIYEGKVNKIVDFGAFVNILPGKDGLVHISQISD
ERVENVADYIQEGAVIKVKVLDVDNKGRIKLTMKGIEA
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgctaaatctaacacctgtaacgaaaacgtttcagtttggtaatcaagaagttacttta
gaaacccaacgcattgcgcgccaagcttctggtgcggtgcttgttaccatgggcgaaatc
caagtattggccactgtggttggtaaaaaagaaactaagcctggtcaagacttctttcca
ctaacggttaactatcaagaaaagtattatgctgcgggtaaaatcccaggtggcttcatt
aagcgcgaaaaccgtccaagcgaaaaagaaactctaactagccgtctaatcgaccgtcca
attcgtccactgttccctgaaggttacatgaacgaagtgcaagtggttttgactgtggta
tcggctgataaagaaaatgatcctgatattgcagctatgattggtgcttctgccgcactt
gcgatttctggtatcccattcgatggtcctatcggcgctgcccgtgtgggttatgatgcg
gaaaacggctatgttctaaacccaacgtatgcgcagctagaaacctctttactagacatg
gtggttgcgggtactgaagacgccgtactgatggttgagtctgaagcgaaagaacttagc
gaagaccaaatgctaggtggcgtattgttcgctcaccaagaattccaagtagctgtgaat
gccgttaaagaattcgcagcggcggtaggtactgagcgttgggattggcaagcgccagaa
attgatactgaattgtatggcaagatgaaagaagtagcgtttgctgatcttacagcggct
tatcaaattaaagataagctagcacgtcaagatgccgttgatgcagcgaacactaaactc
aaagaagcgcttttggttgatactgaagaagaaagcaacgctgaagagttatctaaactg
ttcaagaagcttcagaaagaagtagtacgtgagcgtatcttatctaacgaacctcgtatc
gatggtcgtgataacaagacggttcgtgacttaaacatccaaacagatgtgctgaaaggc
actcatggttctgcgctattcactcgtggtgaaactcagtcaatcggtacagttacttta
ggctctactcgcgacgcgcaagtggttgaattcctgcacgaagtacaaaaagacaacttc
ttgttccactacaacttccctccttactctgtaggtgagtgtggtcgtatgggtgcacct
ggccgtcgtgaagtcggtcacggtcgtctagctcgtcgtggtgttcaagccatgatgcca
agcctagaagacttcccatacacagtgcgtgtggtttctgaaattacagaatcaaatggc
tcttcttctatggcgtctgtatgttctgcatctctagcactaatggatgcgggtgtaccg
attaaagcacctgttgcgggtatcgctatgggtcttgtgaaagaaggcgaacgcttctct
gttcttactgatatcttgggtgatgaagatcacctaggtgatatggactttaaagtagcc
ggctctgaagcaggtattactgcactgcaaatggatatcaaaatccaaggtatcactgag
cagattatggaaatcgcgcttgaacaagcacttgatgcacgtatgaccattcttaagcaa
atgaatgaagttattgcagaacctcgctctgaaatgccaagcaatgctccaacctaccta
accgttaagatccctgcagacaaaatcgcagaagctatcggtaaaggtggtgcgactatt
cgtggcattactgaagaaacaggtgcggatgtggacattagcgaagaaggtgttatcagt
atcttcgccttgactaaagacgcagcagaaaaagccaaaggtatgtttgaagcggttact
gcggaagcagaagttggcactatctacgaaggtaaagtgaacaagattgttgactttggt
gcattcgtaaacattcttcctggtaaagatggtttagtacatatttcacagatctcagat
gagcgtgttgaaaatgttgctgactacatccaagaaggtgcagtgatcaaggttaaagtt
ctagatgtggacaacaaaggtcgcatcaaactaaccatgaaaggaattgaagcctaa
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