Bermanella marisrubri: HF888_13200
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Entry
HF888_13200 CDS
T06527
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bmar
Bermanella marisrubri
Pathway
bmar03030
DNA replication
bmar03430
Mismatch repair
bmar03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HF888_13200 (dnaE)
03430 Mismatch repair
HF888_13200 (dnaE)
03440 Homologous recombination
HF888_13200 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmar03032
]
HF888_13200 (dnaE)
03400 DNA repair and recombination proteins [BR:
bmar03400
]
HF888_13200 (dnaE)
Enzymes [BR:
bmar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HF888_13200 (dnaE)
DNA replication proteins [BR:
bmar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HF888_13200 (dnaE)
DNA repair and recombination proteins [BR:
bmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HF888_13200 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
QIZ85119
LinkDB
All DBs
Position
complement(2838139..2841633)
Genome browser
AA seq
1164 aa
AA seq
DB search
MSNNNSFVHLRVHTEYSLVDGIVRVKELIKAADADQQIALTISDQSNMFALVKFYTACQA
TGIKPIISADVFIENPDDMANPYAITLIAQNDVGYRNLTELVSAGFTKNQHHDRAQLKQE
WFEEKADGLIALSGFQRGDIEEALKKDKFELAASRLDRWLELFPQRFYLELQRTQRPNDE
ALLQKSIKLAADKQVPVVATNDVRFMKQDDFDAHEARVCIGEGMTLIDPRRERRYSDQQY
FKTQQQMCELFEDIPSAITNSVEIATRCNVQVLLGKYFLPEYPIPDGLTENEFFKKISYE
GLEERLEFLIDKNDPQYEEVRKAYFDRLDFELDIIIQMGFPGYFLIVMDFIQWAKDHDIP
VGPGRGSGAGSLVAYAQKITDIDPLEYDLLFERFLNPERVSMPDFDIDFCMEKRDRVISY
VADNYGREAVSQIVTYGTMAAKAVVRDVARVQGKSYGLADKLSKLIPGDPGMTLAKALDE
EPALGEFIDSDEEAQEIWEMAQKLEGITRQTGKHAGGVVIAPTKLTDFSPTLCEEDGTGL
VTQFDKNDVETAGLVKFDFLGLRTLTIIDWALNTINDIRAKNNEEPLRIEEIPLDDAPSY
KLLKEAKTTAVFQLESRGMKDLIRRLEPDNIEEMIALVALFRPGPLESGMVDDFINRKHG
RAEVAYPHPDYQHESLKEILEPTYGVIVYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKP
EEMAKQRETFREGAASIGNDPDLAMKIFDLVEKFAGYGFNKSHSAAYAVVSYQTLWLKTH
YPAPFMAAVLTSDMQNTDKVVIFIEECREMGLDLVLPDVNESEYGFTVNDSGAIVYGLGA
VKGVGEGPIEAIITARKEKGPFTDLFHFCKSVDKSKINKRVLEALVRCGAFDKIGPNRSV
LFASIEDALKAADQSAKNAAAGMMDMFGVVEEEANINPYDEYKNKVRDWTPKQKLKGEKD
TLGLYVTGHPFDEYETELKNIARTRLANIQADKKPQKIAGIVVDQRVMKTKRGGNMAIVT
IDDRTARMDVRLFSDIYEQYKDKLLVDHLLIMEVEVKYDNYNDSLGANLIHLWDVTQARA
IFSQGVKLTLNYAKIDRHLIRSMTEKLAPFNVDGAQVLVDYVGPQAKARLQLGQDYKVEA
NDDLLYRLQHEFGDDNVEVVYESA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgtccaataacaactcctttgttcatctgagagtacatactgagtactcattggtagat
ggtattgtccgcgttaaggagttgattaaagccgctgacgcggatcagcaaattgctctg
acaattagtgatcagagtaatatgttcgcattggttaaattttacacggcttgtcaagca
actggaattaagccgattatttccgcagacgttttcattgagaaccctgacgatatggca
aacccatatgcgattaccttaattgcacaaaatgatgtgggatatcgcaatcttaccgaa
ttggtgagtgcgggttttaccaagaaccaacatcatgacagagcgcaattaaaacaggaa
tggtttgaagaaaaagcagatggtttgattgcgctgtccggttttcagcgcggagatatc
gaagaagctttgaaaaaagacaaattcgaattagccgcatcgcgtttggatcgttggctt
gaattgtttcctcagcgtttttatctggaactacagcgcactcagcgacccaatgatgaa
gctctgctacaaaagtccataaagttagcggccgacaagcaagtaccagtggttgctacc
aacgatgtacgctttatgaagcaagacgacttcgatgctcatgaggcgcgtgtctgcatt
ggtgagggcatgacgctgattgatccccgtcgagaacgacggtacagcgaccagcagtat
tttaaaacccagcaacagatgtgtgagctgttcgaagatatcccttctgcaattaccaat
tcggtagagatcgccacccgttgtaatgtgcaagtactgttaggtaaatatttcctgcca
gaatacccgattccagacggtttaacagaaaacgagttcttcaaaaagatttcatatgaa
gggctagaggaacggcttgagtttctaatcgataaaaacgatccgcaatatgaagaggtc
agaaaggcttattttgatcgcctagatttcgaacttgatatcattatccaaatgggattt
cctggatatttcttgattgtaatggactttatccagtgggctaaagaccatgatattcca
gttggaccaggccgtggttccggtgcgggttcgttagtggcgtatgcacaaaagattact
gatattgaccctcttgaatacgatttactgttcgagcgttttttgaacccagagcgggtg
tccatgcctgactttgacatcgacttctgcatggaaaaacgagaccgcgtaatcagttac
gtggctgataactatggccgagaggcggtatcgcagattgtgacctatggcaccatggca
gctaaagcggtagtgcgtgacgtggcacgtgtgcagggtaaaagctatggtctggctgac
aagttgtccaaattaatacccggtgaccctggtatgacattggccaaagcccttgatgaa
gaaccggctcttggtgagttcatcgatagtgatgaagaagctcaagaaatttgggaaatg
gcgcagaagcttgaaggtattacgcgtcaaactggtaagcatgccggtggtgtagtgatc
gctcccactaaactcactgacttttctcccacgttatgtgaagaagacggcactggcttg
gtaactcagtttgataaaaacgatgttgaaacggcaggcctagtaaaattcgacttcttg
gggttaagaacgctaactatcatcgattgggcgcttaataccattaatgatattcgtgca
aaaaataatgaagagccgctgcgtattgaagaaatcccgctggacgatgcgccttcctat
aaattgttgaaagaagcgaaaaccacggcggtattccaattggaatcgcgtggcatgaaa
gatctaattcgtcgcttagaaccagacaatattgaagaaatgattgcactggtggctctt
ttccgtccgggtccgctggagtcgggcatggtagatgactttatcaaccgtaaacatggt
cgagcagaagtggcgtatccgcacccggattatcagcatgaaagcttgaaagaaattcta
gagccaacctatggggttatcgtatatcaagagcaggttatgcaaatcgctcaggtattg
gcgggttatacattgggcggcgccgatatgctacgtcgtgctatgggtaaaaagaaacca
gaggaaatggccaagcagcgtgaaaccttccgtgaaggtgcggccagtattggtaatgac
cctgatcttgcaatgaaaattttcgacttagttgaaaaatttgcgggctatggtttcaac
aaatctcactccgcagcatatgcagtggtgtcttaccaaacgctttggctaaagacccat
tatcctgcgccttttatggcagcagtactaacatcggatatgcagaacacagacaaagtc
gtgatcttcatcgaggaatgtcgggagatgggattagatctcgtgctgcctgatgtaaat
gagtccgagtatggctttacggttaatgattctggagccattgtttatggcttaggtgct
gtcaaaggtgtaggtgaaggcccaatagaagcaattatcactgcacgtaaagaaaaaggt
ccgttcacagatttattccacttttgtaagtctgtggataaaagcaaaatcaataagcgt
gttttagaagcattagtgcgttgtggtgcatttgataaaattgggccaaatcgttcggtt
ttatttgcaagtatcgaagatgccttgaaagcagcagatcagagtgcgaaaaatgcggcg
gctggaatgatggatatgtttggtgttgtcgaagaagaagccaacattaacccttacgac
gagtataaaaataaagtacgagattggacgccaaagcagaaattgaagggtgaaaaagat
acgctgggtttatatgtaaccggacacccatttgacgaatatgaaactgagctcaaaaac
attgcgagaacacgtttagcgaacatacaagcagacaaaaagccacaaaaaattgctggc
attgttgttgatcagcgagttatgaagactaagcgcggtggtaatatggcgattgtaacc
attgatgaccgaactgctcgaatggacgtgcgtttgtttagtgatatttatgaacaatac
aaagacaagctattggttgaccacttattgattatggaagtggaagttaaatacgataat
tataatgattctttgggtgctaacttaatccatttgtgggatgtaactcaggcccgagcc
attttttcacagggcgtcaagttgacgctgaattatgcgaaaattgatcgccatttaatt
cgcagtatgacagaaaaactcgcaccgtttaatgtggatggcgcacaagttctcgtggat
tatgtaggcccgcaagccaaagcacgcttgcagttagggcaagactacaaagtagaggcc
aatgacgatttactgtaccgactacagcatgaatttggtgatgataacgtcgaagtggtt
tatgagtctgcataa
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