Bermanella marisrubri: HF888_14085
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Entry
HF888_14085 CDS
T06527
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
bmar
Bermanella marisrubri
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmar03400
]
HF888_14085 (phrB)
Enzymes [BR:
bmar01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
HF888_14085 (phrB)
DNA repair and recombination proteins [BR:
bmar03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
HF888_14085 (phrB)
Prokaryotic type
HF888_14085 (phrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
QIZ85283
LinkDB
All DBs
Position
complement(3031193..3032629)
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AA seq
478 aa
AA seq
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MSSFNAVWFRRDLRVHDNPALFHAMKNGQCIAFYCLAQKQWDEHQVSLRQRSLIRQQLED
LTQSLAALGVPLIVIDTADFKSIPKTFVSVLQQYNVEQLFCNAEYEVNEVALTKNVTEAL
QQQDIKCHEYHDQCLIQPGVIVNKQDQPYKVFTAFKKAYLAQLDIYMRDLYPLPKKQQAP
KVKTDISALQSIAQVDIDPWQGSEQVALDALDEFCKDRIKAYKRDRDIPSLDGTSTLSPY
LAIGSLSVRQCWQMSQQVSPSGSKPEGIATWQSELIWRDFYRHLIYFFPHVCQYKAFKQE
TDHLPWKKDQALFQAWCDGRTGYPLVDAAMRQLNQTGWMHNRLRMVAAMFLSKHLFIDWR
LGEAYFMQQLIDGDLASNNGGWQWSASTGVDAVPYFRIFNPIRQSERFDSKGTFLRQYVP
ELASLDDKRIHNPDPITVKKLGYPAPIVDHKQAVVQTKQWFKELDASNKEFYSQESLI
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtctagttttaatgccgtttggtttcgacgagaccttcgtgttcacgacaatccggcg
ctattccatgccatgaaaaacggtcagtgcattgcgttctattgcttagcgcaaaaacaa
tgggacgagcatcaagtctctctacgccagcgatcacttatacgtcagcagttagaagat
ttaacgcaatcacttgcggctttgggtgtgccactcattgtcattgataccgcggatttt
aaatccattcctaaaacattcgtgagtgttttgcagcaatacaatgttgagcaactgttt
tgcaatgctgaatacgaagttaatgaagtggcgctgactaaaaatgtgacagaagcttta
cagcaacaggatataaaatgtcatgaatatcatgatcagtgcttaatacaaccaggtgtt
attgttaacaaacaagatcaaccttacaaagttttcaccgcgtttaagaaggcatattta
gcgcagttggatatttacatgagggatttatatccgttgccaaagaaacagcaagcaccc
aaagtaaaaaccgatatcagtgctttgcaatctattgctcaggtggatattgacccttgg
caaggtagtgaacaggttgcgctggatgcattggatgaattttgtaaagatcgaatcaaa
gcctacaaacgtgatcgtgatattccatcgctggatggcactagtacgctaagcccttat
ttagccatcggtagtttgagcgttcgtcagtgttggcagatgtcgcagcaagtgagccct
tcgggaagcaagcctgagggtatagcgacctggcaatctgaattgatttggagagatttt
tatcgtcacctcatttatttctttcctcatgtttgtcaatacaaagcctttaagcaagaa
accgatcatttgccatggaaaaaagatcaagccttgttccaagcgtggtgtgatggtcgt
actggctatccgctggttgatgcagccatgcgccaattaaatcaaactggatggatgcat
aatcgtttgcgcatggtcgccgctatgtttttaagcaagcatttatttattgattggcgc
ttaggtgaggcctatttcatgcaacagctgatcgatggcgatctcgccagtaacaatggc
ggttggcagtggagtgcgtctactggtgtggatgctgttccatactttcgtatttttaat
ccaattcgccaaagtgaacgttttgatagtaaaggtacatttttgaggcagtacgtgccc
gagctggctagcttagatgataagcgaatacataacccagatcccattacggttaagaag
ctgggctatccagccccgattgtggatcataaacaagcagtggtacaaactaagcagtgg
tttaaagagttggatgcctcaaataaagaattttattctcaggagtctttaatatga
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