Bermanella marisrubri: HF888_14515
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Entry
HF888_14515 CDS
T06527
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bmar
Bermanella marisrubri
Pathway
bmar03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bmar00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HF888_14515 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmar03021
]
HF888_14515 (rpoC)
03400 DNA repair and recombination proteins [BR:
bmar03400
]
HF888_14515 (rpoC)
Enzymes [BR:
bmar01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HF888_14515 (rpoC)
Transcription machinery [BR:
bmar03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HF888_14515 (rpoC)
DNA repair and recombination proteins [BR:
bmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HF888_14515 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QIZ85362
LinkDB
All DBs
Position
complement(3120485..3124708)
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLNLLRKESQAEEFDSIRIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCSR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYYESFVVIDPGMTTLEKGQLLNDEQYYEAIEEFGDEFDAKM
GAEAVQSLLKDIDLGEEIQELREMIPATNSETKLKKISKRLKLLEAFDKSGNDPKWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKMVEREEPVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTTEAQLEA
RALMMSTNNVLSPANGDPIIVPSQDVVLGLYYMTRDKIAAIGEGSIFGGIDEVQRAYRTG
QAELHAKVKVRITQTVYDEDGTEVTTTKVEDTTVGRALLFEIVPKGIPFEAVNQAMKKKA
ISKLLDMAYRNCGLKDTVIFADQVMYTGFSYATKSGASIGVNDFVIPDAKADIIGDAEKQ
VKDIEDQFASGLVTQGEKYNKVVDIWSRANELVANAMMENIGTDTVTDRDGNEVDQESFN
SVYIMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVMQYFTSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTQEGLKMTPLIEGGDVVVPLGGRIL
GRVVAQDIIKPGTDDEVVAPAGTLIDEKWVDIIESASVDDVMVRSPITCSTKFGICASCY
GRDLARGHLVNPGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRATAIDSVQVKNPGTVR
LHNMKTVEREDGDLVLVSRSSAIAIADEFGREREYYKLPYGAVISSHDGTTVEAGQKIAS
WDPHTHPIISEVGGRVEFVGLEEGITITRQTDELTGLSILEVMDPANRPAAGKDIRPMIK
LVDAKGEDINFPGTNTPAQYLLPANALVNHEDGSEVKVGDVIARIPQESSGNKDITGGLP
RVADLFEARKPKEPAILAEVSGVVGFGKETKGKKRLVITPKDGSEPYEELIPKWRQMNVF
EGESVEKGEVISDGPLNPHDILRLLGVSELALYITNEVQEVYRLQGVGINDKHIETIIRQ
MLRKVDILDAGDTDFIQGDQVEYSDFLEVNAGIDGEDKMPAKGQRQLLGITKASLATESF
ISAASFQETTRVLTEGAVTGKQDHLRGLKENVVVGRLIPAGTGLAYHAERRRKREQREAD
KFGPQTTPSVSADEVEAALSEALKDNI
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttattaaatttgctacgcaaagagtctcaggctgaagaattcgactctatt
cgaatcggccttgcgtcacctgatatgatccgttcatggtcattcggtgaggttaaaaaa
cccgaaacaattaactatcgtacgttcaagcccgagcgtgatggtttgttctgttctcgt
atctttggtccgatcaaagactacgagtgcttgtgtggtaagtacaagcgactaaaacac
cgcggtgtaatctgtgagaagtgtggcgttgaagtaacgctggcaaaagttcgtcgtgag
cgtatgggtcacatcgaattggcttctcctgttgctcatatttggttcttgaagtctcta
ccaagccgcattggtttgatgctagacatgacgctgcgtgatattgaacgcatcctgtac
tatgagtcattcgtagtaatcgacccaggtatgacgacgcttgaaaaaggtcagctactg
aacgatgagcagtactacgaagccatcgaagaattcggtgacgagtttgatgctaagatg
ggtgcggaagcagtccagagcttgctaaaagacatcgatcttggagaagaaattcaagag
ttgcgtgagatgattcctgcgacgaactctgagaccaagcttaagaaaatttctaagcgt
ttgaagttgctagaagcgtttgataaatctggaaacgatccaaaatggatggtgatggaa
gtactaccagtactaccacctgatttacgtcctctggttcctctagatggcggtcgtttc
gcaacttcggatctgaacgatctttatcgtcgtgtgatcaaccgtaacaaccgtttgaag
cgtctacttgagcttaacgcgcctgacatcatcgtacgtaacgaaaagcgtatgttgcaa
gagtctgtagatgcgttgcttgataacggtcgtcgcggtcgtgcgattaccggttctaac
aagcgtcctctaaaatcgcttgccgacatgatcaaaggtaagcaaggtcgtttccgtcag
aacctactaggtaagcgtgttgactactctggtcgttccgtaattaccgtaggcccatac
ttgcgtctacaccagtgtggtcttcctaagaagatggcacttgagctatttaagccattt
attttcagcaagcttgagcaccgtggtctagccacaaccatcaaagcagctaagaaaatg
gtagaacgtgaagagccggttgtttgggatatcttagatgaagtgatccgtgagcaccca
gttatgcttaaccgtgcaccaacacttcaccgtttgggtatccaagcatttgaacctttg
ctaatcgaaggtaaagcgattcagcttcacccactagtgtgtgcggcttataacgctgac
ttcgacggtgaccaaatggcggtacacgttccactgaccacagaagctcagttggaagca
cgtgcgctaatgatgtctaccaataacgtactttctcctgcgaacggtgatccgatcatc
gtaccgtctcaggacgttgtattgggtctgtattatatgacccgtgacaagatagcggct
attggtgaaggttctatttttggtggtattgatgaagttcagcgtgcttaccgtacaggc
caagcagagcttcatgccaaagtaaaagtgcgcatcactcaaactgtttacgatgaagat
ggtactgaagtaactaccactaaagtggaagatactactgttggtcgtgcgctattgttt
gaaatcgtaccaaaaggtattccttttgaagcggttaaccaagcaatgaagaagaaagcg
atctctaagcttttggatatggcttatcgtaactgcggccttaaagataccgttatcttc
gcagaccaagttatgtataccggtttctcatacgcaaccaagtccggcgcttctatcggc
gtaaacgattttgttattcctgatgcgaaagcggacatcatcggtgatgcagagaaacaa
gtaaaagacattgaagatcagtttgcttctggtttggtaacccaaggcgagaagtacaac
aaagtagttgatatatggtctcgtgcgaacgagcttgttgcaaacgcgatgatggaaaat
atcggtactgataccgtgacggatcgcgatggcaatgaagtagatcaagagtcgttcaac
agcgtttatatcatggcggactccggtgctcgtggtagcccagctcagattcgtcagttg
gcgggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaaccccgatcaca
gcgaacttccgtgaaggtctgtcggtaatgcagtactttacctcaacccacggtgctcgt
aagggtctagccgataccgcactgaaaacagctaactccggttacctaacgcgtcgtctg
gtagacgttgctcaggacgtagttgtaaccgaacacgattgtggcactcaagaaggtctg
aagatgaccccgcttatcgaaggcggcgacgttgttgtacctctaggtggtcgtattctt
ggtcgtgttgtggcgcaagacattattaagccaggcactgatgacgaagtagttgcacca
gcaggtacgttgatcgacgagaaatgggtagacatcattgaatcggccagtgttgatgac
gtgatggtgcgttcaccaattacctgtagcactaagtttggtatttgtgccagctgttac
ggtcgtgatttggcccgaggtcaccttgttaacccaggtgaatctgtgggtgttatcgca
gcacagtcaatcggtgagccaggtacacagctaaccatgcgtacgttccacatcggtggt
gcggcatcacgtgcaacggctatcgatagcgtgcaggttaaaaacccaggtacagtacgt
cttcacaacatgaagacggtagaacgtgaagatggcgatctagtattggtatctcgttct
agtgcgattgccattgccgatgaattcggtcgtgagcgtgagtactacaagctgccttat
ggtgcagtgattagctctcacgatggtacgacggttgaagccggtcagaagatcgcaagc
tgggatccacatactcacccaatcatctctgaagtaggtggtcgcgttgagttcgtaggt
ctagaagaaggtattactattactcgtcaaacagatgagctaacaggtctgtcgatcctt
gaggtgatggaccctgctaaccgtcctgcagcgggtaaagatattcgtccaatgatcaag
ttggtggatgcgaagggtgaggatattaacttccctggcaccaatacaccggctcagtat
ctattaccagcgaatgctttggttaaccacgaagatggttctgaagtaaaagtgggtgac
gtaattgcacgtatcccgcaagaaagctctggtaacaaggacatcaccggtggtctaccg
cgcgtagcagacttgttcgaagcgcgtaaaccaaaagagcctgctattttggcagaagtg
tccggtgtggttggtttcggtaaagaaaccaaaggtaagaagcgtttagtgattactccg
aaagatggcagcgagccgtatgaagagttgattccgaagtggcgtcaaatgaacgtattc
gaaggtgaaagtgtagaaaaaggtgaggtgatctctgatggtccgctaaacccacacgat
atccttcgtctattgggcgtaagcgagctagcgctatacattaccaacgaagtacaagaa
gtttaccgtttacaaggcgtaggtattaacgataagcacatcgaaacgatcattcgtcag
atgctgcgtaaagtggatatcctagatgcgggcgatactgacttcattcaaggcgatcag
gttgaatactctgacttcctagaagtgaacgcgggcattgatggcgaagacaagatgcca
gccaaaggccagcgtcaattgttgggtatcaccaaagcatcgttggctactgagtccttc
atctctgcggcatcgttccaagaaacgacgcgcgtactgaccgaaggtgcagtgaccggt
aaacaagatcacctacgtggtctgaaagaaaacgtcgtggttggccgtctgattcctgcg
ggtacaggtttggcttaccatgccgagcgccgccgtaagcgtgagcagcgtgaagccgat
aagttcggtccacaaaccacgccaagtgtgagcgcagacgaagttgaagcagcgctttca
gaggcattgaaagacaacatctaa
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