KEGG   Bermanella marisrubri: HF888_14635
Entry
HF888_14635       CDS       T06527                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
bmar  Bermanella marisrubri
Pathway
bmar02024  Quorum sensing
bmar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bmar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HF888_14635 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    HF888_14635 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bmar03019]
    HF888_14635 (hfq)
   03036 Chromosome and associated proteins [BR:bmar03036]
    HF888_14635 (hfq)
Messenger RNA biogenesis [BR:bmar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     HF888_14635 (hfq)
Chromosome and associated proteins [BR:bmar03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    HF888_14635 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: QIZ85381
LinkDB
Position
complement(3144998..3145243)
AA seq 81 aa
MSKGHSLQDPYLNALRKERISVSIFLVNGIKLQGHIESFDQFVIVLKNTVSQMVYKHAIS
TVVPSRNVRLAPPEKDDDSAE
NT seq 246 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcactccctacaagacccttatttgaacgcgctgcgcaaagagcgtatt
tcagtgtcgatctttttagttaatggtatcaagctgcaaggacatattgagtcttttgat
cagtttgtgattgttttgaaaaataccgtaagccagatggtgtataagcacgcgatttct
accgtggtgccatctcgcaatgtgcgtttggcgccgcctgaaaaagacgacgacagcgca
gagtaa

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