Burkholderia metallica: WJ16_01340
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Entry
WJ16_01340 CDS
T04871
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bmec
Burkholderia metallica
Pathway
bmec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WJ16_01340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmec03019
]
WJ16_01340
03400 DNA repair and recombination proteins [BR:
bmec03400
]
WJ16_01340
Enzymes [BR:
bmec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WJ16_01340
Messenger RNA biogenesis [BR:
bmec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WJ16_01340
DNA repair and recombination proteins [BR:
bmec03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
WJ16_01340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
SaeA_1st
Motif
Other DBs
NCBI-ProteinID:
AOJ30245
UniProt:
A0ABT8PM11
LinkDB
All DBs
Position
1:309324..311171
Genome browser
AA seq
615 aa
AA seq
DB search
MSRALEILDEVFGYPAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPALLRREAGQ
GAGIVVSPLIALMQDQVAALSEVGVRAAYLNSTLSGAEAAATERALREGEIDLLYVAPER
LMTGRFLDLLERAKIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPSVPRIALTATAD
AITRDEIIHRLALDDARVFVSSFDRPNIRYRIVEKDNARSQLLDFIRAEHTNPDGTTDAG
VVYCLSRRKVEETAEWLKAQGVRALPYHAGMEFEVRQKHQEMFQREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKMIDESDADD
AHKRVQTSKLDALLGLCETISCRRVRLLNYFGEASQPCGNCDTCLEPPDSWDATREAQMA
LSCVFRAQRASGFNFGSSHLIEILRGGRTEKVLQRGHDKLTTFGIGASLSEPEWRAIFRQ
LVAYGYLAVDHGGFGALMLTEAAKPVLKNEEKVTLRRYVKPQRTRQSSSRSGTRVDPTAG
MGTRERARWDALRAWRAETAKTDGVPAYVIFHDATLAEIARNAPETIEDLRHIPGMGVRK
LERFGDEIIDVIESA
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcgccctcgaaatcctcgacgaagtatttggttatcccgcctttcgcggccag
cagggtgagatcgtcgagcacgtcgccggcggcggcgattgcctcgtgctgatgccgacc
ggcggcggcaagtcgctgtgctatcagattcccgcactgctgcgccgcgaggccgggcag
ggtgccggtatcgtcgtgtcgccgctgatcgcgctgatgcaggaccaggtcgccgcactg
agcgaagtgggcgtgcgcgcggcatacctgaattcgacgctgtcgggtgccgaagccgcg
gccaccgagcgtgcgctgcgcgaaggcgaaatcgacctgctgtacgtcgcgccggaacgg
ctgatgacggggcgcttcctcgatctgctcgagcgcgcgaagatcggcctgttcgcgatc
gacgaagcgcactgcgtgtcgcaatgggggcacgatttccgtccggaatacatccagctg
tcggtgctgcacgaacggttcccgtcggtgccgcgcatcgcgctgaccgccacggcagac
gcgatcacgcgcgacgagatcatccaccgcctcgcgctcgacgatgcacgcgtgttcgtg
tcgagcttcgaccgcccgaacatccgataccggatcgtcgagaaggacaacgcgcgttcg
cagctgctcgatttcatccgcgccgagcacacgaatcccgacggcacgacggacgcgggc
gtcgtctactgcctgtcgcgccgcaaggtcgaggaaacggccgagtggctgaaggcgcag
ggcgtgcgcgcgctgccgtatcacgcggggatggagttcgaggtgcggcagaagcatcag
gagatgttccagcgcgaggagggcatcgtgatgtgcgcgacgatcgcgttcggcatgggc
atcgacaagccggacgtgcgtttcgtcgcgcacctggatctgccgaagagcgtcgaaggc
tattaccaggaaacgggccgcgccggccgcgacgggatgcccgcgaacgcgtggatggcg
tacgggctcggcgacgtcgtccagcagcgcaagatgatcgacgagtccgatgccgacgac
gcgcacaagcgcgtgcagacgtcgaagctcgacgcgctgctcgggctgtgcgagacgatc
tcgtgccgccgtgtgcggctgctgaactacttcggcgaggcgagccagccgtgcggcaac
tgcgacacgtgcctcgagccgcccgattcgtgggacgcgacgcgcgaggcgcagatggcg
ctgtcgtgcgtgttccgcgcgcagcgtgcgagcgggttcaacttcggctcgagccacctg
atcgagatcctgcgcggcgggcgcaccgagaaggtgttgcagcgcggccacgacaagctc
acgacgttcgggatcggcgcgtcgctgtccgagcccgagtggcgcgcgattttccggcag
ctcgtcgcatacggctacctggcggtcgatcacggcggcttcggcgcgctcatgctgacc
gaagccgcgaagcccgtgctgaagaacgaggagaaggtcacgctgcgccgctacgtgaag
ccgcagcgcacgcggcaatcgtcgagccgcagcggcacgcgcgtcgatccgacggccggc
atgggcacgcgcgagcgcgcacgatgggatgcgctgcgcgcgtggcgtgcggaaaccgcg
aagacggacggcgtgccggcctacgtgatcttccacgatgcgacactcgccgaaatcgcg
cgcaacgcgccggagacgatcgaggacctgcgccacatccccggcatgggcgtgcgcaag
ctcgagcgcttcggcgacgagatcatcgacgtcatcgaatcggcgtga
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