Burkholderia metallica: WJ16_09375
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Entry
WJ16_09375 CDS
T04871
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
bmec
Burkholderia metallica
Pathway
bmec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WJ16_09375 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmec03021
]
WJ16_09375 (rho)
03019 Messenger RNA biogenesis [BR:
bmec03019
]
WJ16_09375 (rho)
Transcription machinery [BR:
bmec03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
WJ16_09375 (rho)
Messenger RNA biogenesis [BR:
bmec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
WJ16_09375 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOJ31704
UniProt:
A0ABT8P9X3
LinkDB
All DBs
Position
1:2099629..2100891
Genome browser
AA seq
420 aa
AA seq
DB search
MHLSELKSLHVSELIEMANGLEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPEMSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GQPPEASKHKIMFENLTPLHPNKPLSLEREMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKQNHPDVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPATRHV
QVAEMVIEKAKRLVEMKHDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPSINL
NKSGTRREEMLIKPEILQKIWVLRKFIHDMDEVEAMEFLLDKIRQTKSNSEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatccgagctcaagtctctgcacgtctccgaactgatcgaaatggccaacggc
ctggagatcgaaaacgcgaaccgcctgcgcaagcaggagttgatgtttgccattcttaaa
aagcgcgccaagacgggagagacgatcttcggtgacggcacgctcgaagtgctgccggac
ggcttcggcttcctgcgctcgccggaaatgtcgtacctcgcgagcaccgacgacatctac
atcagcccgtcgcagatccgccgcttcaacctgcacaccggcgacaccatcgaaggtgaa
gtccgcacgccgaaggacggcgagcgctacttcgcgctggtgaaggtcgacaaagtcaac
gggcagccgcccgaggcctcgaaacacaagatcatgttcgagaacctcacgccgctgcac
ccgaacaagccgctgtcgctcgaacgcgaaatgcgcggcgaggaaaacgtcacgggccgc
atcatcgacatgatcgcgccgatcggcaagggccagcgcggcctgctcgtcgcgtcgccg
aagtcgggcaagaccgtgatgctccagcacatcgcgcacgcgatcaagcagaaccacccg
gacgtgatcctgttcgtgctgctgatcgacgagcgccctgaagaagtgaccgaaatgcag
cgctcggtcgccggcgaagtgatcgcgtcgacattcgacgagccggccacgcgccacgtc
caggtcgccgaaatggtgatcgagaaggccaagcgcctcgtcgaaatgaagcacgacgtc
gtgatcctgctcgactcgatcacgcgtctcgcacgcgcctacaacaccgtgatcccggca
tcgggcaaggtgctgacgggcggtgtcgacgcgaacgcactgcagcgtccgaagcgcttc
ttcggcgcggcgcgcaacatcgaggaaggcggttcgctgacgatcatcggcaccgcgctg
atcgaaaccggcagccgcatggacgacgtgatctacgaagagttcaagggcaccggcaac
atggaagtgcacctcgagcgccgtctcgcggaaaagcgcgtgtacccgtcgatcaacctg
aacaagtcgggcacgcgtcgcgaggaaatgctgatcaagcccgagatccttcagaagatc
tgggtgctgcgcaagttcatccacgacatggacgaagtcgaggccatggaattcctgctc
gacaagatccgtcagacgaagagcaactccgagttcttcgacctgatgcgccgcggcggc
tga
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