Burkholderia metallica: WJ16_12020
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Entry
WJ16_12020 CDS
T04871
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bmec
Burkholderia metallica
Pathway
bmec03030
DNA replication
bmec03430
Mismatch repair
bmec03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bmec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WJ16_12020 (dnaE)
03430 Mismatch repair
WJ16_12020 (dnaE)
03440 Homologous recombination
WJ16_12020 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmec03032
]
WJ16_12020 (dnaE)
03400 DNA repair and recombination proteins [BR:
bmec03400
]
WJ16_12020 (dnaE)
Enzymes [BR:
bmec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
WJ16_12020 (dnaE)
DNA replication proteins [BR:
bmec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
WJ16_12020 (dnaE)
DNA repair and recombination proteins [BR:
bmec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
WJ16_12020 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
AOJ32186
LinkDB
All DBs
Position
1:complement(2670943..2674476)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGK
GVKPIAGCDVWIANPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASW
LEGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWAKVFPGGFYIELQRYGQPGAE
AYIQQAATLAAALKLPVVATHPTQFMTGDDFTAHEARVCISEGDILANPRRQKRFTTDQY
FRTQDDMVALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLETRLVQLYPVEAERDAQRETYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMK
EEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERFIRRLDPSKADWSLAQVPLDDPASFQ
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREK
VEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMVKHRE
IFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMTLAMDDTDKVKILFDDCVMNNLTVLPPDINQSHYRFEPVAEADGKRSRTIRYGLGAVK
GSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNPNRAQLIA
SVPLAMEAADQAEANAMQAGLFDMGAESPHAHALVDEPAWDDKRRLQEEKGALGFYLSGH
LFDAYRDEVRRFVRQKLGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQCEIT
IFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTMN
GNADAAVLRRVLESHVSKDDPAAANMVEAPAPRGGGRDGGRRPQAPLPNGLAVQVHYSNA
RAQGEMRLGDAWRVKPSDVLLAELRAAFDGSVVEITY
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcctcgcttcgtccatcttcgcgttcactccgaattctcgattgccgacggc
atcgtgcgcattgacgacatcgtcaaggcagcggccgcagacggtcagggtgcgctcgcg
ctcaccgatctcggcaacgcattcggcctcgtccgtttctaccaggaagcccgcggcaag
ggcgtcaagccgatcgccggctgcgacgtctggatcgccaatcccgacgaccgcgacaag
ccgtcgcggctgctgctgcttgtcaaggacaaggtcggctacctgaatctctgcgagctg
ctgtcgaaggcgtggctcacgaaccagtaccgcggccgtgcggaactcgatgcgagctgg
ctcgaaggcgagcttgcgcaggggctgctcgcgctgtcgggcgcacaacagggcgacatc
gggcttgcgctggccgcgggcaacgaagaagccgcgcgccggcacgccgagcgctgggcg
aaggtgttcccgggcggtttctacatcgagctgcagcgttatggccagccgggcgccgag
gcgtacatccagcaggccgcgacgctcgccgcggcgctgaagctgccggtcgtcgcgacg
catccgacgcagttcatgactggcgacgatttcaccgcgcacgaggcgcgcgtgtgtatc
tcggaaggcgacatcctcgcgaacccgcggcgccagaagcgcttcacgaccgatcagtat
ttccgcacgcaggacgacatggtcgcgctgttcgccgacctgccgtcggcgatcgcgaac
acggtcgaaatcgcgaaacgctgcaacctgaagctcgagctcggcaagccgaaactgccg
ctgttcccgacgccggacggcatgtcgctcgacgactacctggtccagctgtcgaaggaa
gggctcgagacccggctcgtgcagctgtatccggtcgaggcggagcgcgacgcgcagcgc
gaaacgtactacaagcgcctcgaattcgagtgcgggaccatcacgaagatgggtttcccg
ggctacttcctgatcgtcgcggacttcatcaactgggcgaagaacaacggcgtgccggtc
ggcccgggccgcggttcgggcgccggttcgctggtcgcatacgcgctcggcatcaccgat
ctggatccgctgcgctacaacctgctgttcgagcgcttcctgaacccggaacgcgtgtcg
atgcccgacttcgacatcgacttctgccagcacggccgcgaccgcgtgatccagtacgtg
aaggagaagtacggcgcggacgccgtgtcgcagatcgcgacgttcggcacgatggccgcg
aaggcggccgtgcgcgacatcggccgcgtgctcgacctcggctacatgttcaccgacggc
gtcgcgaagctgatcccgttcaagccgggcaagcacgtgacgatcgccgacgcgatgaag
gaggagccgcagcttcaggagcgctacgaccacgaggacgaagtgcatcagttgctcgac
ctcgcgcagcgcgtcgagggcctcacgcgtaacgtcgggatgcacgcgggcggcgtgctg
atcgcgccgggcaagctgaccgatttctgcccgctgtacacgcagggcgacgacggcggc
gtggtcagccagtacgacaaggacgacgtcgaagccgtcggcctcgtgaagttcgacttt
ctgggtctgacgacgctgacgatcctcgactgggccgagcgcttcatccgccgcctcgat
ccgtcgaaggccgactggtcgctcgcgcaggtgccgctcgacgatcccgcgtcgttccag
attctgaagaaggccaacacggtcgcggtgttccagctggaaagccgcgggatgcagggc
atgctgaaggatgcgcagcccgaccgcttcgaggacatcatcgcgctcgtgtcgttgtat
cgtccgggcccgatggatctgattccgagcttctgcgcgcggaagcacggccgcgagaag
gtcgagtatccggatccgcgcgtcgaacccgtcctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctcggcggcgcg
gacttgctgcgtcgcgcgatgggcaagaagaagcccgaggagatggtcaagcaccgcgag
atcttcgccgagggtgcggcgaagaacggcctcacgcgcgagaagtcggacgagatcttc
gacctgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggccgcctatgcg
ctgctcgcgtattacaccgcgtggctgaaggcgcatcatccggccgaattcatggcggcc
aacatgacgctcgcgatggacgacaccgacaaggtgaaaatcctgttcgacgattgcgtc
atgaacaatctcaccgtgctgccgccggacatcaaccagtcgcattaccgcttcgagccg
gttgccgaagccgacggcaagcgctcgcgcacgatccgctacggcctcggcgcggtgaag
ggcagcggccagaatgcgatcgaggaaatcctgcgtgcgcgcgaggagaaggcgttcacc
gacctgttcgacttctgtgagcggatcgaccggcgcgtcgtcaaccgccgcacggtcgag
gcgctgatccgcgccggcgcattcgattcgctgaatccgaaccgcgcgcagttgatcgcg
tcggtgccgctggcgatggaagcggccgaccaggccgaggcgaacgcgatgcaggccggc
ctgttcgacatgggcgccgagtcgccgcacgcgcatgcgctcgtcgacgagcccgcgtgg
gacgacaagcgccgcctgcaggaagaaaagggcgcgctcggcttctacctgtccggccac
ctgttcgacgcgtatcgcgacgaagtgcgccgcttcgtgcggcagaagctcggcgacctg
aaggaagggcgcgacaagctcgtggccggcatcatcgcgtcgctgcgtacgcagatgacc
cagcgcggcaagatgctgatcgcgctgctcgacgatggcacgggccagtgtgaaatcacg
atcttcaacgagcagttcgaggccaacaaggcgctgttcaaggaagacgagttgctgatc
gtgcaggggcaggcacgcaacgatgcgttcacgggcggcatccgcttcacagccgatacc
gtgatggatctcgaacgcgcgcgcagccgctatgcgcaggcggtgcggctgacgatgaac
ggcaacgccgacgcggccgtgttgcgccgcgtgctcgagtcgcacgtgtcgaaggacgat
ccggcggctgcgaacatggtcgaagcacccgcgccgcgcggcggcgggcgcgacggcggt
cgccgcccgcaggcgcctctgccgaacgggctcgcggtccaggtgcactacagcaacgcg
cgggcacaaggtgaaatgcgtctcggcgacgcgtggcgcgtgaagccgagcgacgtgctg
ctcgcggagctgcgcgcggcgttcgacggcagcgtcgtcgaaatcacgtactga
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integrated database retrieval system
