Burkholderia metallica: WJ16_12035
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Entry
WJ16_12035 CDS
T04871
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bmec
Burkholderia metallica
Pathway
bmec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WJ16_12035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmec03019
]
WJ16_12035
Enzymes [BR:
bmec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
WJ16_12035
Messenger RNA biogenesis [BR:
bmec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
WJ16_12035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
RPC3_helical
Motif
Other DBs
NCBI-ProteinID:
AOJ32189
LinkDB
All DBs
Position
1:complement(2676648..2678138)
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AA seq
496 aa
AA seq
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MSDSVAQPVDATFDQFGLAADILKAIAEQGYTTPTPIQAQAIPVVLAGRDVMGAAQTGTG
KTASFSLPIIQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYAKHTPLRSAV
VFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSGEIKKLASTYLRNPQTIEVARSNSTNANVTQIVYDVA
EGDKHAAVVQLLRDRGLKQVIVFCNSKIGASRLARNLERDGVVASAIHGDKTQLERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFSAEDYVHRIGRTGRAGATGDALSL
CSPNERKQLADIEKLIKRPLEMQTLTLDKPARARHDERGGDRNGERGSERSGERGGRRDR
DEHRGASGRRSGGSERGHHRRHEAPVDDFFLKPYEPSAPAKQQDDAQPAQQPEKKGPKRQ
VAALLGGFGMPRKPSA
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattctgtcgcccagcccgtcgacgcaaccttcgatcaattcggccttgccgcc
gatatcctgaaagccattgcggagcagggttatacgacgccgacgccgatccaggcgcag
gccattccggtcgtgctcgccggccgcgacgtcatgggcgccgcgcaaacgggcaccggc
aagaccgcgagcttctcgctgccgatcatccagcgcctgctgccgcaggccaacacgagc
gcgtcaccggcgcgccacccggtgcgtgcgctgattctcacgccgacccgcgaactcgcc
gaccaggtcgccgcgaatgtgcacgcgtatgcgaagcacacgccgctgcgcagcgcggtc
gtgttcggcggcgtcgacatgaacccgcagatggccgaactgcgccgcggcgtcgagatc
ctgatcgcgacgcccggccgcctgctcgaccacgtgcagcagaagaccgcgaatctcggc
caggtccagatcctcgtgctcgacgaagccgaccggatgctcgacatgggcttcctgccc
gatctgcagcgcatcctgaacctgctgccgaaggagcgtcagacgctgctgttctcggcc
actttctccggcgaaatcaagaagctcgcgtcgacgtacctgcgcaacccgcagacgatc
gaagtcgcacgcagcaactcgacgaacgcgaacgtcacgcagatcgtctacgacgtcgcc
gaaggcgacaagcacgcagccgtcgtgcagttgctgcgcgatcgcgggctcaagcaggtg
atcgtgttctgcaacagcaagatcggcgcaagccggctggcgcgcaatctcgagcgcgac
ggtgtggtcgcgtcggcgattcacggcgacaagacgcagctcgagcggatgcaggcgctc
gacgcgttcaagcgcggcgagatcgaggcgctggtcgcgaccgacgtggccgcgcgcggc
ctcgacatcgccgagctgccggccgtgatcaacttcgatctgccgttcagcgcggaagac
tacgtgcaccggatcggccgtaccggccgcgcgggggcgacgggcgacgcgctgtcgctg
tgcagcccgaacgagcgcaagcagctcgccgatatcgagaagctgatcaagcgtccgctc
gaaatgcagacgctcacgctcgacaagccggcgcgcgcccgtcacgacgagcgcggcggc
gatcgcaacggcgagcgcggtagtgaacgaagtggcgaacgcggcggccgccgcgatcgc
gacgaacatcgcggtgcgtcggggcgccggtcgggcggctccgagcgcggtcatcaccgt
cgccacgaagcgccggtcgacgatttcttcctgaagccgtacgagccgtcggcgccggcg
aagcagcaggacgacgcgcagcctgcgcagcagcccgagaagaaggggccgaagcgtcag
gtcgccgcgctgctcggcgggttcgggatgccgcgcaagccgtcggcataa
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