Burkholderia metallica: WJ16_14255
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Entry
WJ16_14255 CDS
T04871
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
bmec
Burkholderia metallica
Pathway
bmec03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
bmec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
WJ16_14255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmec03400
]
WJ16_14255
Enzymes [BR:
bmec01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
WJ16_14255
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
WJ16_14255
DNA repair and recombination proteins [BR:
bmec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
WJ16_14255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
C1_2
Motif
Other DBs
NCBI-ProteinID:
AOJ32596
LinkDB
All DBs
Position
1:complement(3160737..3161564)
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AA seq
275 aa
AA seq
DB search
MPELPEVEVTRRGIEPFVAGRRVERVDVRTAMLRWPVPAGLAEQLRAREVLAVERRGKYL
LFEVDAGWFIVHLGMTGTLRVLPAAGVPVAAKHDHIDWIFDEFVLRFRDPRRFGAVLWHP
REAGDVHAHPLLASLGVEPFSPAFTGALLHARTRGRTVSVKQALLAGDMVVGVGNIYASE
SLFRAGIRPTTAAGKVSLPRYERLADAVRATLADAIERGGSTLRDFVGSNGESGYFQLDC
FVYDRAGLPCRVCGTPVRQIVQGQRSTYFCATCQR
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgccagagttgccagaagtcgaagtcacgcgccggggcatcgaaccctttgtcgcgggc
cgccgcgtcgagcgtgtcgacgtccgtaccgcgatgctgcgctggcctgtgccggcgggg
ctcgccgaacaattgcgcgcgcgcgaggtgctcgccgtcgagcgccgcggcaagtacctg
ctgttcgaggtcgacgcgggctggttcatcgtccatctcggcatgacgggcacgctgcgc
gtgctgcccgcggccggcgtgccggtcgccgcgaagcacgaccacatcgactggatcttc
gacgaattcgtgctgcggttccgcgatccgcggcgtttcggcgcggtgctgtggcacccg
cgcgaagcgggcgacgtgcatgcgcatccgctcctcgcgagcctcggcgtcgagccgttc
tcgccggcctttaccggcgcgctgctgcacgcacgcacgcgcggccgcaccgtgtcggtc
aagcaggcgctgctcgcgggcgacatggtcgtcggcgtcggcaacatttatgcatcggag
agcctgtttcgcgccggcatccggccgacgacggccgccggcaaggtctcgctgccgcgc
tacgagcggctggccgatgcggtgcgcgcgacgctcgccgatgcgatcgagcgcggcggc
agcacgttgcgcgatttcgtcggcagcaacggcgaaagcggctacttccagctcgactgc
ttcgtctacgatcgtgccggcctgccttgccgcgtctgcggcacgccggtccgccagatc
gtgcagggccagcggtcgacctatttctgtgcgacctgccagcgttga
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