Brevundimonas mediterranea: GYM46_01165
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Entry
GYM46_01165 CDS
T06564
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bmed
Brevundimonas mediterranea
Brite
KEGG Orthology (KO) [BR:
bmed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmed03032
]
GYM46_01165 (topA)
03400 DNA repair and recombination proteins [BR:
bmed03400
]
GYM46_01165 (topA)
Enzymes [BR:
bmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GYM46_01165 (topA)
DNA replication proteins [BR:
bmed03032
]
Prokaryotic type
DNA Topoisomerases
GYM46_01165 (topA)
DNA repair and recombination proteins [BR:
bmed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GYM46_01165 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
KARI_N
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QIH71710
UniProt:
A0AB37E349
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All DBs
Position
224485..227112
Genome browser
AA seq
875 aa
AA seq
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MNLVIVESPAKAKTINKYLGSGYEVLASYGHVRDLPSKDGSVLPDDDFSMHWEADAKGAK
RLSEIAEAAKRADRVILATDPDREGEAISWHVLEVLNKKKALKDTHVERVTFNAITKSAV
LEAMANPRQIDMELVEAYLARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRIVVDR
EMEIEKFKAQEYWSIEADLNADSPPFTARLVKHAGKRVQRLDIKDEATAAAARAAIDAGD
FTINSVEKKPVRRNPAPPFTTSTLQQEASRKLGFSAQRTMQAAQKLYEGVDETGGLITYM
RTDGVQTTPEGIAQAREVIAKEFGPAFVPQEPRYYKTKAKNAQEAHEAIRPTNIARHPDS
LRLESDLQRLYELIWKRMVASQMEAARMDRTTVEIETSDGLTGLRATGQVVTFDGFLAVY
EEGRDEKQKGAEEDEGDDTSRLPALKEGAKAKVDAIRTDQHFTEPPPRYSEATLVKKLEE
LGIGRPSTYASTLSTLRDREYVRVDKNRFYPEDKGRLVTAFLEQFFRKWVEYDFTAALET
RLDEVSAGQLDWKVLLREFWSDFHAATQAAGELRTTAILDALNESLGAHIFPAKEDGSDP
RECPLCHQGQLSLKTSRFGAFIGCERYPDCKYTRPVASPSAEDGSAESGDRELGMDPETG
QPVQLKIGRFGPYVEITPPEGDKPKRSSLPKGWSPASLTLDQALRLLALPREVGVHPEDG
KMITAGLGRYGPFVLHAGTYANVSDIDEVFEVGLNRAVALLAEKRAGRPGRGAATAPLKD
LGAHPETGEPIHVMAGRFGPYVKSGKINATLPKGVAPEDLTVEDALPLLAAKAGAAPKKK
APAAKKAAAPKKAAAAKKPAAKKAPTKKAKAKTED
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcgttatcgtcgagagccccgcaaaggccaagaccatcaataaatacctcggc
tccggctatgaggttctggcgtcctacggccacgtccgcgacctgccgtcgaaggacggc
tcggtcctgcccgacgacgacttctccatgcactgggaggccgacgccaagggcgccaag
cggctgtccgaaatcgccgaggccgccaagcgcgccgaccgcgtcatcctggcgaccgac
cccgaccgcgaaggggaagccatcagctggcacgtgttggaggtgctgaacaagaagaag
gcactgaaggacacgcacgtcgagcgcgtcaccttcaacgccatcaccaaatccgccgtc
ctcgaggccatggccaatccgcgccagatcgacatggagttggtcgaggcctatctggcc
cgccgggcgctggactatctggtcggcttcaccctgtcgccggtcctgtggcgcaagctg
ccgggcgcgcgctcggccgggcgggtccaatccgtcgccctgcgcatcgtcgtcgatcgc
gagatggagatcgagaagttcaaggcgcaggaatactggtccatcgaggccgatctgaac
gccgacagcccgcccttcaccgcccgtctggtcaagcacgccggcaagcgagtgcagcgt
ctggacatcaaggacgaggcgaccgccgccgctgcgcgcgcggccatcgacgccggcgac
ttcaccatcaactcggtcgagaagaagcccgtccgccgcaacccggccccgcccttcacc
acctcgaccctgcaacaggaagcctcgcgcaagctgggcttcagcgcccagcgcaccatg
caggcggcgcagaaactgtatgagggcgtggacgagaccggcggcctgatcacctatatg
cggaccgacggcgtccagaccacgcccgagggcatcgcccaggcgcgagaggtcatcgcc
aaggagttcggcccggccttcgttcctcaggaaccgcgctattacaagaccaaggccaag
aatgctcaggaagcgcacgaagcgatccggccgacaaacatcgcccgtcatccggacagc
ctgcgcctcgaatccgatcttcagcgtctgtacgagctgatctggaagcggatggtcgcc
tcgcagatggaggcggcgcgcatggaccgcaccacggtggagatcgaaacctcggacggc
ctgaccggcctgcgggccaccggccaggtggtgacgtttgacggcttcctggccgtctat
gaggaaggccgcgacgagaagcagaagggcgcggaagaggacgagggcgacgacaccagc
cggctgcccgcgctgaaggaaggcgccaaggccaaggttgacgccatccgcaccgaccag
catttcaccgaaccgcccccgcgctattcggaagccaccctggtcaagaagctggaagag
ctgggcatcggccggccgtcgacctacgcctcaaccctgtcgaccctgcgcgaccgggaa
tatgtccgcgtcgacaagaaccgcttctatccggaggacaagggacggctggtcacggcc
ttcctggagcaattcttccggaaatgggtcgaatacgacttcaccgccgccctggagacg
cgtctggacgaggtgtcggccggtcagctggactggaaggtcctgctgcgcgagttctgg
tcggacttccacgccgcgacccaggccgccggcgaactgcgcaccacggccattctggac
gcgctgaacgagtcgctgggcgcccatatcttcccggccaaggaagacgggtccgacccg
cgcgaatgccccctgtgccaccagggccagctcagcctgaagaccagccggttcggcgcc
ttcatcggctgcgaacggtacccggactgcaaatacacccgccccgtcgccagcccttcg
gctgaagacgggtcggcggaaagcggcgaccgcgaactgggcatggacccggagaccggc
cagccggtgcagctgaagatcggccgtttcggcccctatgtcgaaatcaccccgcccgag
ggcgacaagcccaaacgctcgtccctgcccaagggctggtcgcccgcctcgctgacgctg
gaccaggcgctgcgcctgctggccctgcctcgtgaagtcggggtccaccccgaggacggc
aagatgatcacggcgggcctgggccggtacggacccttcgtcctgcacgccggcacctat
gcgaacgtctcggacatcgacgaggtgttcgaggtcggtctgaaccgcgccgtcgccctg
ctggccgagaagcgcgccggtcgtcccggtcgcggcgccgccacggctccgctgaaggac
ctgggcgcccacccggagacgggcgagccgatccacgtcatggccggccgcttcgggccc
tatgtcaaatcgggcaagatcaacgccaccttgcccaagggcgtggcgcccgaagacctg
actgtggaagacgccctgcccctgctggccgccaaggccggggcggcgccgaagaagaag
gccccggcggccaagaaggcggctgcgccgaagaaggctgcggcggccaagaagccggcg
gccaagaaggcgccgacgaagaaggccaaggccaagacggaagactga
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