Brevundimonas mediterranea: GYM46_01245
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Entry
GYM46_01245 CDS
T06564
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
bmed
Brevundimonas mediterranea
Brite
KEGG Orthology (KO) [BR:
bmed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bmed03016
]
GYM46_01245 (rnd)
Enzymes [BR:
bmed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GYM46_01245 (rnd)
Transfer RNA biogenesis [BR:
bmed03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GYM46_01245 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QIH71722
UniProt:
A0AB37E3G5
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All DBs
Position
complement(250747..251898)
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AA seq
383 aa
AA seq
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MTPITTNEALADFCARLATAPFITVDTEFMRETTYWPRLCLIQAASADHAGIIDPMAEGL
DLEPFLDLLRDPKIIKVFHACRQDVEIFVRLGAMPRPMFDTQVAAMAAGFGEQVAYDSLV
RQMLRVELDKGSRFTDWARRPLSDSQLVYALGDVTHLAALYPKLRDRLKKEGRLDWVMSE
MESLIDPALYDTNPENAWKRLKPKKFSAKYLAAFKAVAVWRERAAQERDQPRGRILKDEG
IDEVAQQTPTDPEAFNRLRSVPKGFGGSRLGLELAEELKRVLADPESHAPEMERPAHRQP
APPSVVELLKVLLKAKSDNAGVASKLIATVSDLEKIAVTDDADVDALKGWRREIFGEDAL
KLKRGEIALVLSGSRVEVVEIEG
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcaccaccaatgaggcgctggccgatttttgcgcccgcctcgccaccgcc
ccgttcatcacggtcgacaccgagttcatgcgggaaacgacctactggcccaggctgtgc
ctgatccaggccgcgtccgccgatcacgccgggatcatcgatcccatggcggaaggcctg
gacctggagcctttcctggacctgttgcgcgatccgaagatcatcaaggtcttccacgcc
tgccgccaggacgtcgaaatcttcgtgcgactgggcgccatgcccaggccgatgttcgac
acccaggtggcggccatggcggccgggttcggcgaacaggtcgcctatgattcgctggtg
cggcagatgctgcgcgtcgaactggacaagggcagccgcttcaccgactgggcgcgacgc
ccgctgtcggacagccagctggtctacgcgctgggcgacgtgacccatctggcggccctg
tatcccaagctgcgcgaccggctgaagaaggagggacggctggactgggtgatgtcggag
atggagagcctgatcgatccggccctgtacgacaccaatcccgagaacgcctggaagcgg
ctgaagcccaagaaattctcggccaaatacctggcggccttcaaggccgtggcagtctgg
cgcgagcgtgcggcccaggagcgtgaccagccgcgcggccgcatcctgaaggacgagggc
atcgacgaggtcgcgcaacagacccccaccgatcccgaggccttcaaccgtctgcgttcg
gtgcccaagggcttcggcggatcgcgcctgggcctggagctggccgaggagctgaagcgc
gtcctggccgatcccgaatcccatgcgcccgagatggagcggccggcccatcgccagcca
gcgccgccgtcggtggtggagctgctgaaggtgctgctgaaggccaagagcgacaacgcc
ggggtggcgtccaagctgatcgccaccgtgtcggatctggaaaagatcgccgtcaccgac
gacgccgatgtggatgcgttgaagggctggcggcgcgagatcttcggggaggacgcgctg
aagctgaagcggggcgagatcgccctggtgctgagcggatcgcgggtcgaggtcgtcgag
atcgaggggtag
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