Brevundimonas mediterranea: GYM46_05815
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Entry
GYM46_05815 CDS
T06564
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
bmed
Brevundimonas mediterranea
Brite
KEGG Orthology (KO) [BR:
bmed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmed03400
]
GYM46_05815 (addB)
Enzymes [BR:
bmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GYM46_05815 (addB)
DNA repair and recombination proteins [BR:
bmed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
GYM46_05815 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Sigma70_r2
Motif
Other DBs
NCBI-ProteinID:
QIH72506
UniProt:
A0AB37E5T7
LinkDB
All DBs
Position
1182219..1185314
Genome browser
AA seq
1031 aa
AA seq
DB search
MSGFDPFTAASPRWYAVPAYRPFLEDLAAGVLAWLGDLPPETLSDATILLPNRRAARAFT
GALSKLSQGRPILLPQVRPLGDLEEDEPPFTPGALGLDLPPAIPALTRRFEMARMIVEQF
DNSLTPMRALDLADALGGFLDSCQLEEVPNPERIATLVDGEMAEHWERSAEFLGLAVEAW
PKRLAELGLVDPAWRRATLLRRLAELWDHTPPTQAVIAAGSTGTVPAAGDVLKAVARAPL
GCVVLPGLDLDLDAAVWDRLDEQHPQSAMKRLLDRVEVARADVRPWFAPSQPPAALARGQ
ARQRLVNEALRPAEATDDWRRAIRDLRSTAAARGEARDPIAEGLQGLSLLTVRAEEEAAA
AIALMMRETLETPNPDGTGRTCALVTPDQALGRRVAARLERWGVIPDSSAGVPLSRLPAG
ALVDLCARWIADPVQPHLLLAIVKHPLVRFDLGDAPQAAAVAALEEHALRGPRPRDFAAI
RRRLLEAVEPDRRGKAPPEWKRERLSAATRLVERLQTAIEAATAVFLPQTERNGADLNAA
ASAFTRLIETLAGQDAWAGPDGEAAAALLSGLIEGGASLGRIDQTDLAELTTSLVRETVV
RTGGATHPSLRILGAIEARLVRADRMILAGLEEGVWPQAAPTDPFLSRPMRKALGLPPPE
RRLGQTAQDFVQAACADEVILVHSERRGGQPAVRSRWLWRLEMLTRGAHSAETPIELPRP
RTVLDWTRALDAPPPGPPRFAKRPEPRPPVHRRPRSLYVTRIERWVRDPYAIYALWVLGL
EAMERPGASAEALARGNAVHAAIERLTLDWPDDLPDDCEAVLHDHLLRELGARGFEDAAM
AREAPLARNCARWLTDFERRRRARGIDILVEQQGTMTFDAPAGPFTVKAFADRIELASDG
AAVMDFKTGAAPSAKQVKSGFAPQLTLTAAILADGGFERTNGPVTPDELTYVRVVGRKTA
GEVITRASGAEAADLAQAALDGLKRRVARFDDENTPYVSWAAPQFMGNQGGNYDHLARVW
EWSVIGDGDEE
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
gtgagcggcttcgatcccttcacggcggccagcccccgctggtacgccgtccccgcctac
cggcccttcctcgaagacctggccgccggcgtcctggcctggctgggcgatctgccgccc
gagaccctgtccgacgccaccatcctgctgcccaaccgacgcgccgcccgcgccttcacc
ggcgccctgtcgaaactgtcccagggtcgccccatcctgctgccccaggtccggccgctg
ggcgatctggaggaggacgagccgcccttcacccccggcgccctcggcctcgacctgccg
cccgccatccccgccctgacccgccggttcgagatggcgcggatgatcgtcgaacagttc
gacaacagcctgacgccgatgcgcgccctggatctggcggatgcgctcggcggcttcctc
gattcctgccagctggaagaggttccgaaccccgaacggatcgccaccctggtcgacggc
gaaatggccgaacactgggaacggtccgccgagttcctgggcctggcggtcgaggcctgg
cccaaacgcctcgccgagctgggcctggtcgatccggcctggcgccgcgcgaccctgctg
cgccgcctcgccgaactgtgggaccacacgcctccgacccaggccgtcatcgccgccggt
tcgaccggcaccgtccccgccgccggcgacgtgctgaaggccgtggctagggcgcccctg
ggctgcgtcgtcctgcccggcctcgatctcgatctggacgcggcggtctgggaccggctg
gacgaacagcatccgcaaagcgcgatgaaacgactgctggaccgggtcgaggtcgcccgc
gccgatgtccgcccctggttcgccccgtcccagccccctgccgccctcgcccgtggccag
gcccgccagcgcctggtcaacgaggccctgcgccccgccgaggccaccgacgactggcgc
cgcgccatccgcgaccttcgctcgaccgccgccgcgcgcggcgaggcccgcgaccccata
gccgaaggcctgcaaggcctgtccctgctgaccgtccgcgccgaggaagaggccgctgcc
gccatcgccctgatgatgcgcgagacgctggaaacgcccaatcctgatggaacgggtcgc
acctgcgcgctcgtcacgcccgaccaggccctgggccgccgcgtcgccgcccggctggaa
cgctggggcgtcatcccggattcgtctgccggcgtccccctgtcgcgtctgcccgccggc
gccctggtcgatctgtgcgcccgctggatcgccgatccggtccagccccatctgctgctg
gcgatcgtcaaacatccgttggtccggttcgacctgggcgacgcccctcaagccgccgcc
gtcgccgcgctggaggaacacgccctgcgcggtcctcgcccgcgcgacttcgccgccatc
cgccgtcgcctgctcgaggcggtcgaacccgaccggcgcggcaaggccccgcccgagtgg
aaacgggaacgcctgtcggccgccacccgccttgtcgagcgtctgcaaaccgccatcgag
gccgcgaccgccgtcttcttgccccagaccgagcgaaatggggccgacctgaacgccgcc
gcctcggcctttacacgccttatcgagaccctggccggccaggacgcctgggccggtccc
gacggcgaggccgccgccgcccttctgtccggcctgatcgagggcggggcctcgctgggc
cgcatcgaccagaccgacctggccgagctgaccacgtccctggtgcgcgagaccgtcgtc
cgcaccgggggcgcgacccatccgtcgctgcggatcctcggggccatcgaggcgcggctg
gtgcgcgccgaccggatgatcctggccgggctggaagaaggcgtctggccccaggccgcc
ccgaccgaccccttcctgtcgcgtccgatgcgcaaggccctgggcctgcccccgcccgaa
cgccgcctgggccagacggcccaggacttcgtccaggccgcctgcgccgacgaggtcatc
ctggtccacagcgaacggcgcggcggccagccggccgtgcggtcccgctggctgtggcgg
ctggagatgctgacccgcggcgcccattccgccgagacgccgatcgaactgccccgcccc
cgcaccgtcctggactggacccgcgccctggacgcccctccgcccggcccgccgcgcttc
gccaaacggcccgagccgcgcccgccggtgcatcgccgcccccgcagcctctatgtcacc
cgcatcgaacgctgggtgcgcgatccctacgccatctacgccctgtgggtgctggggctg
gaggcgatggagcgtcccggcgcttctgccgaagcgctcgcccgtggcaacgccgtccac
gccgccatcgaacggttgaccctggactggcccgacgacctgcccgacgactgcgaagcc
gtcctgcacgaccatctgctgcgtgaactgggcgcacgggggttcgaggatgcggccatg
gcgcgcgaggcgccgctcgcccgcaactgcgcccgctggctgaccgatttcgagcgccgc
cgccgcgcgcggggcatcgacatcctggtcgagcaacaggggaccatgaccttcgacgcc
cccgccggccccttcaccgtcaaggccttcgccgaccggatcgagctggcctcggacgga
gcggcggtgatggacttcaagaccggcgccgctccatccgccaaacaggtcaagtccggc
ttcgccccgcaactgaccctgaccgccgccatcctggccgacggcgggttcgaacgcacc
aatggcccggtcacgcccgacgaactgacctatgtccgggtggtcgggcgcaagacggcg
ggcgaggtcatcacccgcgcctcaggcgccgaggccgccgacctggcccaggcggcgctg
gacgggctgaagcgccgcgtcgcccgcttcgacgacgagaacacgccttacgtctcctgg
gccgccccccagttcatgggcaaccagggcggcaactacgatcacctggcccgcgtctgg
gaatggtcggtgatcggcgacggggacgaagaatga
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