KEGG   Brevundimonas mediterranea: GYM46_06025
Entry
GYM46_06025       CDS       T06564                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
bmed  Brevundimonas mediterranea
Brite
KEGG Orthology (KO) [BR:bmed00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bmed03400]
    GYM46_06025
Enzymes [BR:bmed01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     GYM46_06025
    5.6.2.6  RNA 3'-5' helicase
     GYM46_06025
DNA repair and recombination proteins [BR:bmed03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    GYM46_06025
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr DEAD Helicase_C Cas3-like_C_2 ResIII DUF6406 T4SS-DNA_transf
Other DBs
NCBI-ProteinID: QIH72547
UniProt: A0AB37E5M2
LinkDB
Position
1222408..1224921
AA seq 837 aa
MERPRLRRRSAGVTSLPPLFADWFAGRGWSPRRHQLEMVAAGQAGRHALLVAPTGGGKTL
AGFLPSLIDLAERGPRPQHGPGSGVHTLYLSPLKALTTDVERNLMTPIREIGLNIHVETR
TGDTKQSKRQRQRDFPPDILLTTPEQLALFCAWEGARSYFADLKCVVLDEVHAIWSGKRG
DLLALGLARLQQFSPGMRRVGLSATIEDPDLIRGWLSPPPTVEDVALVKGDPGAPAVIDV
LISEGKVPWAGHTGRHAIPEVYAAIQRATLALIFVNTRWQSEFVFQQLWAINDDNLPIGL
HHGSLAAEQRRKIEAAMARGDLRAVVCTSTLDLGIDWGDVDLVIQMAAPKGSSRLVQRIG
RANHRLDEPSRALLVPASRFEMLECQAAREAVADNAFDWEPIHIGTLDALAQHVMGVACS
EAFDIQALYDEITGCGPYRDLAWEQFEEVVDFVATGGYALRTYDRFARIVRTPDGRWKAR
TKDIAQRHRMNVGAIVSAGTLNVRVAGRRGGASRQLVPGRKVGEAEEWYFEQLTPGDTFL
FAGQVWAFQGIVGTDALVSHANDKDPKIPSWGGSKFPLSTSLADRVRTMVQDPDHWRVLP
PDVQEWLELQAERSAIPDAESMLVETFPRGSRHFLVAYPFEGNLAHTTLCMLLTRRLDRL
GVGPLGFVVTDYSLAIWSIKPMDQIDLDALFQSDMLGDDLEAWLEESFMMKRSFRNCALI
SGLIERRQPGAEKTGRQVTFSTDLIYDVLRRHQPDHLLLKTARADAASGLLDVARLGQML
ARIEGRIRHQALTRPSPFCVPVLVQIGRERVGGDAAEMILDESAEHLIAEVMDEDAP
NT seq 2514 nt   +upstreamnt  +downstreamnt
atggaacggccacgcctgcgtaggcgctcggctggggtgacgtcccttccccctctcttc
gccgactggttcgcggggcgcggctggtcgccccggcggcatcagctggagatggtggcg
gcgggccaggcgggtcgtcacgccctgctggtggcgccgaccggcgggggcaagaccttg
gccggcttcctgcccagcctgatcgacttggccgagcgggggccccggccgcagcatggg
ccgggctcgggcgtgcataccctgtatctgtcgccgctgaaggccctgaccaccgacgtc
gagcgcaatctgatgacgccgatccgcgagatcgggctgaacatccacgtcgagacgcgg
acgggcgacaccaaacagtccaaacgccagcgccagcgcgacttcccgcccgacatcctg
ctgaccacgcccgaacaactggccctgttctgcgcctgggagggggcgcggtcctatttc
gccgacctgaaatgcgtcgttctggacgaggtccacgccatctggagcggcaagcgcggc
gacctgttagccctgggcctggcgcggctgcagcagttttcgccggggatgcgccgggtg
gggctgagcgcgaccatcgaagacccggacctgatcagaggctggctgagccccccccca
acggtcgaggacgtcgccctcgtcaagggcgaccccggcgccccagccgtgatcgacgtc
ctgatctccgagggcaaggtcccctgggcgggccataccggccgccacgccatccccgaa
gtctacgccgccatccagcgcgcgaccctggccctgatcttcgtcaacacccgctggcag
tcggagttcgttttccagcaactgtgggcgatcaacgacgacaatctgcccatcggcctg
caccacggctccctggcggccgaacagaggcgcaagatcgaggcggcgatggcgcgcggc
gacctcagggccgtggtctgcacctcgactctcgacctcggcatcgactggggcgacgtc
gatctggtcatccagatggcggcgcccaagggctccagccgtctggtccagcggatcggc
cgcgccaaccaccggctggacgagccgtcgcgcgcccttctggtgcccgccagccggttc
gagatgctggaatgccaggcggcgcgcgaggcggtggccgacaacgccttcgactgggag
ccgatccatatcggcaccctggatgcgctggcccagcacgtcatgggcgtcgcctgttcc
gaggccttcgacatccaggccctgtatgacgagatcaccggctgcggcccctatcgcgac
ctggcgtgggagcagttcgaggaggtggtcgatttcgtcgccaccggcggatacgcgctg
cgcacctatgatcggttcgcccgtatcgtccgcacccccgacggccgctggaaggcccgc
accaaggacatcgcccagcgccaccggatgaatgtcggcgccatcgtctcggccggaacc
ctgaacgtgcgggtggcgggccgtcgcggcggggcctcgcgccagttggtcccgggccgc
aaggtgggcgaggccgaggaatggtatttcgaacagctgacgcccggcgacaccttcctg
ttcgccggccaggtctgggcgttccagggcattgtcgggaccgacgccctggtcagccac
gccaatgacaaggacccgaagatcccgtcctggggcgggtccaaattccccctgtccacc
tccctggccgaccgggtgcggaccatggtccaggaccctgaccactggcgcgtcctgccg
cccgacgtgcaggaatggcttgagcttcaggccgaacggtccgccattcccgacgccgaa
tccatgctggtcgagacctttccgcgcggcagtcggcatttcctggtcgcctatccgttc
gagggcaatctggcccacaccacgctttgcatgctgttgacgcgacggctggaccggctg
ggcgtcggcccgctgggcttcgtcgtcaccgactattccctggccatctggtccatcaag
ccaatggaccagatcgacctggacgccctgttccagtccgacatgctgggcgacgacctg
gaggcctggctggaggaaagcttcatgatgaagcggtccttccgcaattgcgccctgatc
tcgggcctgatcgagcgccgccagccgggcgccgagaagaccgggcgtcaggtcaccttc
tccaccgacctgatctacgacgtgctgcgccgccaccagcccgaccatctgctgctcaag
accgcccgcgccgacgccgcctccggcctgctggacgtggcgcgcctgggccagatgctg
gcgcggatcgagggccggatccggcatcaggccctgacccgtccctcgcccttctgcgtg
ccggttctggtccagatcgggcgcgagcgggtgggcggcgacgcggccgaaatgatcctg
gatgagagcgccgaacatctgatcgccgaagtcatggacgaggacgcgccatga

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