Brevundimonas mediterranea: GYM46_08705
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Entry
GYM46_08705 CDS
T06564
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
bmed
Brevundimonas mediterranea
Brite
KEGG Orthology (KO) [BR:
bmed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bmed03016
]
GYM46_08705 (thpR)
Enzymes [BR:
bmed01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
GYM46_08705 (thpR)
Transfer RNA biogenesis [BR:
bmed03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
GYM46_08705 (thpR)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Acb1
Motif
Other DBs
NCBI-ProteinID:
QIH73026
UniProt:
A0AB37E6F6
LinkDB
All DBs
Position
complement(1787776..1788315)
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AA seq
179 aa
AA seq
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MLRLFTALTLPPDVEETLKRRQSGLPGARWRPLDALHVTLAFYGETDERRADDLASELAR
VAGGPFEIVLKGVGAFGDDHRSHTLWAGVETPNERLAVLAGRCKKAGERAGLRLEARDYR
PHVTLAYLKPQTNPDRIGAWMAGHNLLHSPPIRIDRFGLYSSVLTGDGSQYALEREYLL
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
atgttgcgcctgttcaccgccctgaccctgccgccggacgtcgaggagacgctgaaacgc
cgccagtcgggccttccgggcgcgcgctggcgacccctggacgccctgcacgtcaccctg
gccttctacggcgagaccgacgagcgccgggctgacgacctggcctccgaactggcccgc
gtcgccggaggccccttcgagatcgtgttgaagggcgtcggcgccttcggcgacgatcac
cgcagccacaccctctgggccggggtcgagacgcccaacgaaaggctggccgtcctggcg
ggccgctgcaagaaggccggcgaacgcgcgggcctgaggctggaggcccgcgactaccgc
ccgcacgtcaccctggcctatctgaagccccagacgaacccggaccggatcggcgcctgg
atggcgggccacaatctgctgcactcgccgcccatccgcatcgaccgcttcggcctctat
tccagcgtcctgaccggcgacggcagccagtatgcgctggagcgggagtatctgctgtga
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