Brevundimonas mediterranea: GYM46_11075
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Entry
GYM46_11075 CDS
T06564
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bmed
Brevundimonas mediterranea
Pathway
bmed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GYM46_11075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmed03019
]
GYM46_11075
Enzymes [BR:
bmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GYM46_11075
Messenger RNA biogenesis [BR:
bmed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GYM46_11075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Utp25_C
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
QIH74632
UniProt:
A0AB37EBN2
LinkDB
All DBs
Position
complement(2258435..2259907)
Genome browser
AA seq
490 aa
AA seq
DB search
MGLNKALLQALASEGYTKPTPIQEKAIPDVMQGKDLLGIAQTGTGKTAAFALPILHRLAE
NRIAPKPRTTRVLVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGAQERALQQGL
DILVAAPGRLLDHIQQKNLDLSSTEILVLDEADQMLDLGFIKPIRQIVSRIPAKRQNLFF
SATMPTEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVHVEQGRKRALLTEMFSDPEYT
RCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLDAFKKGKLRVLVATDIAA
RGIDVDGVSHVVNFELPHVPEAYVHRIGRTARAGADGTAISFVAGDEMKLLKDIEKVTRQ
KIPAIDRRNDKALGQLDATIMATGVGKKATMPEREGGERNEGGRGGRGRSRVPHRDGVRP
EGGGQPHRQRRARPGETPAAPRPERAYNPLAGERVPSINDNAKPAEGEMKRRPRRRPSNG
GKGYGGAAKA
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgaacaaggcccttcttcaggcgctggcgtcggaaggctacaccaagccgacc
ccgatccaggaaaaggccatccccgacgtcatgcagggcaaggacctgctgggcatcgcc
cagacgggcaccggcaagaccgccgccttcgccctgccgatcctgcatcgcctggccgag
aaccgcatcgcccccaagccgcgcacgacgcgcgtgctggtcctgtcgcccacgcgtgaa
ctggccacccagatcggcgacagcttcaaggcttacggcgcccacctgggcttccgggtc
gcggtcatcttcggcggcgtgaaatacggcgcccaggagcgggccctgcaacagggtctg
gacatcctggtcgcggcgcccggccgtctgctggaccacatccagcagaagaacctggac
ctgtcctcgaccgagatcctcgtcctggacgaagccgaccagatgctggacctgggcttc
atcaagccgatccgccagatcgtcagccgcatcccggccaagcgccagaacctgttcttc
tcggcgaccatgccgaccgagatcggcaagctggcgggcgagctgctgaaggacccggtc
aaggtccaggtcacgccgcaatccaccaccgtccagcgcatcagccagtcggtcgtccac
gtcgaacagggccgcaagcgcgccctgctgaccgaaatgttcagcgatcccgagtacacg
cgctgcctggtcttcaccaagaccaagcacggcgccgacaaggtcgcggcctatctggaa
gcgggcggggtcgaggccggcgccatccacggcaacaagtcccagccccagcgtgaacgc
acgctggacgccttcaagaagggcaagctgcgcgtcctggtcgccaccgacatcgccgcg
cgcggcatcgacgtagacggcgtctcgcacgtcgtgaacttcgaactgccccatgtgccg
gaggcctatgtgcaccgcatcggccggacggcccgcgcgggcgccgacggcaccgccatc
agcttcgtcgccggcgacgagatgaagctgctgaaggatatcgagaaggtcacgcgccag
aagatcccggccatcgaccgccgcaacgacaaggccctgggccagctggacgccaccatc
atggcgaccggcgtcggcaagaaggcgaccatgccggaacgcgagggcggcgagcgcaat
gaaggcggccggggtggtcgtgggcgcagccgcgtgccgcaccgcgacggcgtccgtccg
gaaggcggcggccagccgcatcgccagcgccgcgcccgtcccggcgagactccggccgct
ccgcgtcccgagcgcgcctacaaccccctggccggtgagcgcgtgccctcgatcaacgac
aacgccaagcctgcggaaggcgaaatgaagcgccgtccccgtcgccgtccgtcgaacggc
ggcaagggctacggcggcgcggccaaggcctga
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integrated database retrieval system
