Brevundimonas mediterranea: GYM46_13000
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Entry
GYM46_13000 CDS
T06564
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bmed
Brevundimonas mediterranea
Brite
KEGG Orthology (KO) [BR:
bmed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bmed03032
]
GYM46_13000
03400 DNA repair and recombination proteins [BR:
bmed03400
]
GYM46_13000
Enzymes [BR:
bmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GYM46_13000
DNA replication proteins [BR:
bmed03032
]
Prokaryotic type
DNA Topoisomerases
GYM46_13000
DNA repair and recombination proteins [BR:
bmed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GYM46_13000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
PB1
Motif
Other DBs
NCBI-ProteinID:
QIH73782
UniProt:
A0AB37EA85
LinkDB
All DBs
Position
complement(2669593..2670615)
Genome browser
AA seq
340 aa
AA seq
DB search
MADGSHGVDIAVEVPQGLSWCSDDNPGLTRRRAGKGWSYRDAKDQPVKDAKVLDRIRALA
IPPAWTDVWICPKANGHIQATGRDAKGRKQYRYHAGWSSARSENKFDKLPAFSRALPRLR
AQVEHDLGLRGPVKEKVLATAVRLLEITLIRVGNAAYARENRSYGLTTLNKRHLEVDGAA
LTFEFRGKSGKDHRVSVRDRRLARVVRALEELPGQHLFKYRTADGELCPVTSDDVNAYIR
AAMGDQFSAKDFRTWAGTVSAARALREMEPPTSPSDAKRKITVCVKAVAGLLGNTPTVCR
TSYVHPKVMALYESGELKTALPGPDAKGFETALIRQLAAA
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggatcgcacggcgtggatattgcggtcgaggttccgcaggggctgagctgg
tgcagcgacgacaaccccggcctgacccgccgccgcgccggcaagggctggtcctatcgc
gacgccaaggatcaaccggtcaaggacgcgaaggttctggaccgtatccgcgccctggcc
attccgcccgcctggaccgacgtctggatctgccccaaggccaacggccatatccaggcg
accgggcgcgacgcgaaggggcgcaaacagtaccgctatcacgccggctggagttcggcc
cggtcggagaacaagttcgacaagctgccggccttttcgcgcgccctgccccggctgcgc
gcccaggtggagcatgatctgggtctgagggggccggtgaaggagaaggtgctggcgacc
gcggtgcgtctgctggagatcaccctgatccgggtcggcaatgcggcctatgcgcgggag
aaccgcagctatgggctgaccaccctgaacaagcggcatctggaggtggacggcgcggcc
ctgaccttcgagttccggggcaagagcggcaaggaccaccgggtcagcgtccgcgaccgg
cggctggcgcgggtggtgcgggcgctggaggaactgccgggccagcaccttttcaaatac
cgcacggccgacggggagctgtgccccgtcacctcggacgatgtgaacgcctatatccgc
gcggccatgggcgaccagttctcggccaaggatttccgcacctgggcgggcacggtctcg
gcggcgcgggccctgcgcgagatggagcctccgacctcgccgagcgacgccaaacgcaag
atcaccgtctgcgtcaaggcggtggcgggcctgctgggcaatacgccgacggtgtgccgg
acctcctacgtccatccgaaggtgatggcgctgtacgagagcggcgagctgaagaccgcc
ctgcccggcccagacgccaaggggttcgagacggcgctgatccggcagttggccgcagcc
tga
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