Brevundimonas mediterranea: GYM46_15040
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Entry
GYM46_15040 CDS
T06564
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
bmed
Brevundimonas mediterranea
Brite
KEGG Orthology (KO) [BR:
bmed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmed03019
]
GYM46_15040 (hrpB)
Enzymes [BR:
bmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GYM46_15040 (hrpB)
Messenger RNA biogenesis [BR:
bmed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GYM46_15040 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_30
ResIII
HA2_N
AAA_25
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QIH74150
UniProt:
A0A6G7EKZ3
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All DBs
Position
3067501..3069948
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AA seq
815 aa
AA seq
DB search
MLPIHAVLEPLKAVLAAGNTAVLAAPPGAGKTTVVPLALLDQAWLGEGKILVLEPRRIAA
RAAADRMASTLGETAGGTVGYRTRLQSRIGPKTRIEVITEGVFTRMILDDPGLEGVGAVL
FDEFHERSLDADLGLALARETQGVLREDLRLLVMSATLDVAGVSRLLDGAPVIEAEGRAY
PVETRYLGRNPAERFEEAMARGCLTALGEETGSVLAFLPGQGEIHRVARLVSERLRLPNV
DVVPLYGGLDRVEQDRAIEPAVEGRRKLVLATSVAETSLTIDGVRVVLDGGLSRVPRFEP
SSGLTRLATVRVSRSSAEQRRGRAGRTEPGVCYRLWDEEQTRGLVPHQRPEIQEADLTGL
ALDLARWGARSVEGLALLDPPPAGAMAEARKVLSRLGALDAEGGLSDHGRRLTRIPLSPR
LAHMVAVASDAGDAMTGARIAAVLSEPGLGGSGVDLADRLVGLERDRSPRARDALKLADR
WAKAAGGGKGETVEPGLLLAEAFPERIAKARGKTGELLLASGRGAALDAADHLARESWLA
VAELSAGGGGGEARDRVRLAAALDGTRIEADLGRLIDVEDRLVKEPSGRMVIRRARRIGA
LVLDEKVIGAPDAKTMTAALRAEIEAEGLGALRWGEQATGLRARLAFLHGLDAGWPDVSD
AALLEARADWLWPVLEGAKSLETISDGRLAEALRGLVPWDLQRKLDDLAPGRLDTPLGSA
GIDYGAEGGPRVEIRVQELFGVVTHPTVGGGRVPLTLSLLSPARRPVQVTKDLPGFWAGS
WAAVRSDMRGRYPRHPWPENPADAQPTNRVKPRGT
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgttgccgatccacgctgttctcgaacccctgaaagccgtccttgcggccggaaatacg
gcggtgctggccgcgccgccgggggcgggcaagaccacggtcgtgcccttggccctgctg
gatcaggcctggctgggcgaggggaagatcctggtgctggagccgcgccgtatcgccgca
cgggcggcggcggaccggatggccagcacccttggggagacggcgggcgggaccgtcggc
tatcgcacccggctgcaaagccggatcggaccgaagacgcggatcgaggtgatcaccgag
ggcgtcttcacccggatgatcctggacgaccccggtctggagggggtgggcgccgtcctg
ttcgacgaattccacgagcgcagcctggacgccgacctggggctggccctggcgcgggag
acgcaaggggtgctgcgggaggacctgcggctgctggtcatgtcggcgacgctggacgtg
gcgggggtgtcgagactgctggacggcgcgccggtgatcgaggcggaggggcgggcctat
ccggtcgagacccgctatctggggcgcaatccggccgaacggttcgaagaggcgatggcg
cgggggtgtctgacggcgctgggcgaagagaccggctcggtgctggccttcctgccgggg
cagggcgagattcaccgggtagcgcggctcgtcagcgagcggctgcggttgccgaatgtc
gatgtggttccgctgtacggcgggctggaccgggtcgagcaggatcgggctatcgaaccg
gcggtggaggggcggcgcaaactggtgctggcgacttcggtggcggagaccagtctgacc
atcgacggggtgcgggtggtgctggacggcggtctgtcgcgcgtgccccggttcgagccg
tccagcggcctgacgcggttggcgacggtgcgggtcagccggtcgtcggcggaacagagg
cggggccgggccgggcggaccgaaccgggcgtctgctatcgcctgtgggacgaggaacag
acgcggggcctggtcccgcaccaacggccggagatccaggaggcggacctgaccggtctg
gcgctggatctggcgcggtggggcgcgcggtcggtcgaggggctggccctgctggatccg
cccccggccggggccatggcggaggcgcgcaaggtgttgagccgtctgggggcgctggac
gccgaaggcggcctgtcggatcatggacgacgtctgacgcgcatcccgctgtcgccgcgg
ctggcccatatggtcgccgtggcctcggacgccggggacgccatgaccggggcgcggatc
gcggcggtgctgagcgagccgggcctgggcggctcgggcgtggacctggcggatcgtctg
gtcgggctggaacgggatcggtcgccccgggcgcgggatgcgctgaaactggccgaccgg
tgggcgaaggcggcgggcggcggcaagggcgagacggtcgaaccgggcctgttgctggcc
gaggcctttcccgaacgcatcgccaaggcgcgcggcaagacgggcgaactgttgctggcc
agcgggcgcggggcggcgctggacgcggccgatcatctggcgcgagaatcctggttggcg
gtggcggagctgtcagcgggtgggggcggcggcgaggcgcgcgaccgggtgcggctggcg
gcggcgctggacgggacgcggatcgaggccgacctggggcgattgatcgatgtcgaggat
cggctggtcaaggagccgtccggccggatggtgatccggcgtgcgcgacgcatcggcgcc
ctggtgctggatgaaaaggtgatcggggcgccggacgccaaaaccatgacggcggccctg
cgcgccgagatcgaggccgagggcctaggcgccctgcgttggggcgaacaggcgacgggg
ttgcgggcgcggctggcctttctgcacgggttggatgctggctggccggatgtttcggac
gccgctctgctggaggcgcgggcggactggctgtggccggtgttggagggggcgaagtcg
ctggaaacgatcagcgacgggcggctggccgaggccctgcgggggctggttccctgggat
ttgcagcgcaagctggatgatctcgcgcccggtcggctggacacgcccctggggtcggcg
gggatcgactatggcgccgaaggcgggccgcgcgtggagatccgcgtgcaggagctgttc
ggcgtcgtcacccatccgaccgtcggcggcggacgggttcccctgaccctgtcgctgctg
tccccggcgcggcgacccgttcaggtgacgaaggacctgccggggttctgggccgggtcc
tgggcggcggtgcggtcggacatgcggggccgttatccgcgccatccctggcccgagaac
ccggccgatgcccagcccaccaaccgggtcaagccgcgcgggacctga
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