Brevundimonas mediterranea: GYM46_16490
Help
Entry
GYM46_16490 CDS
T06564
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmed
Brevundimonas mediterranea
Pathway
bmed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GYM46_16490 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmed03400
]
GYM46_16490 (mfd)
Enzymes [BR:
bmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GYM46_16490 (mfd)
DNA repair and recombination proteins [BR:
bmed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GYM46_16490 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QIH74402
UniProt:
A0AB37EB36
LinkDB
All DBs
Position
complement(3351086..3354556)
Genome browser
AA seq
1156 aa
AA seq
DB search
MDQQVTAQHRTDADLGGAPEGLDALVVAERIKASGGVGVFVARDYQRSGGFVQAFRFFSQ
DIEILEYPAWDCLPYDRLSPTAGIAAQRMATLTRLAQRKTGDAPVLVVTTVGAAMQRTPP
KSVTTQAGFETKVGRDLDIQALERYFAANGYVRASTVSERGEFAVRGGVVDVYPPGFEEP
VRLDMFGSELESIRTFDPETQRSTGQMTAVSLAPVSEALLDADAISRFRTGYLKLFGAPG
DDPLYATISEGARRQGMEQWLPLFYETLDSLFDYLPDQAQIFLDNQAESARAERWDLIAD
AYEGRTEAAKAQKGKGGGHAATNRALPPRSLYLDAGDWNQALAGRAVRRFTPFSGGGEDA
GGRLGRTFAAERAQDSVNLFEAVAAHAAALKADGKRVLFASWTEGSSERLATMLADHGLD
HIVAVRDWADVQTAPKDLYLRGVLPVEHGFATDEVAVISETDILGDRLARPRKKRRASNF
LAEASALTTGDLVVHLDHGIGRYEGLKTLDIQQAPHDCLELVYAGESKLYLPVENIDLLT
RYGSDSEGAQLDRLGGAGWQARKSKAKERLRAMAEGLIALAAKRALRETDAVVPPPGLFA
EFCARFPYEETDDQLNAIGDVLEDLGKGTPMDRLICGDVGFGKTEVALRAAFVVAMTGQQ
VAIVAPTTLLARQHYKTFTERFAGWPVKVRQLSRMVGGKEASETRAGLKDGSVEIVVGTH
AVLSEQVGFRDLGLVIVDEEQHFGVKHKEKLKSLRADVHLLTLTATPIPRTLQMALSGIR
EMSIIATPPVDRLAVRTYVTPWDPVLVREALLREKYRGGQAYYVAPRLKDLPAIEKFLRE
QVPEVKFVVGHGQMSATQLEEVMSAFYDGEYDVLVSTTIVESGLDIPTANTLVVHRADMF
GLAQLYQIRGRVGRSKARAFAYLTTDAVKPMTLSAERRLQVLQSLDNLGAGFQLASHDLD
QRGGGNLLGDEQSGHIREVGVELYQQMLEDAVAELREKGEGLNVDRGWSPSINVGASVLI
PEEYVPDLNVRLSLYRRLSDAEQAEDREALAAELIDRFGPLPDEAQQLLKIVGIKSNCRR
ACIEKIDIGPRGAVLTLRDNSFPNPIGLVGLIQKNQAFWKIRPDQKIVVSGDWPTAEERL
KVAERITADLARVAGA
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atggatcaacaggtcaccgcgcagcaccgcaccgacgctgatctgggcggggcgcccgag
gggctggacgccctggtcgtcgccgagcggatcaaggccagcggcggggtcggcgtcttc
gtggcgcgcgactatcagcggtcgggcgggtttgttcaggcgttccgcttcttctcgcaa
gatatcgaaattcttgaatatccggcctgggactgtctgccctacgaccggctgagcccg
acggcggggatcgccgcccagcggatggcgaccctgacgcgcctagcccagcgcaagacg
ggcgacgcgccggttctggtggtcacgaccgtcggtgcggccatgcagaggacgccgccg
aagtcggtgacgacccaggccgggttcgagacgaaggttggccgcgatctcgatatccag
gcgctggagcggtatttcgccgccaacggctatgtccgggcctcgaccgtgtcggagcgc
ggcgagttcgcggtgcggggcggggtggtggatgtctatccgccgggcttcgaggagccg
gtgcggctggacatgttcgggtccgagctggaatcgatccgcaccttcgatcccgagaca
cagagatcgaccggccagatgacggcggtgtcgctggcgcccgtgtcggaggccctgctg
gacgcggatgcgatctcgcgcttccgtaccggctatctgaagctgttcggggcgccgggc
gacgatcccctgtatgcgaccatcagcgagggcgcgcggcgtcagggcatggagcagtgg
ctgccgctgttctacgagacgctggattcgctgttcgactatctgccggaccaggcccag
atcttcctggacaatcaggctgagagcgcgcgggccgagcggtgggacctgatcgccgac
gcctatgaagggcggacagaggccgccaaggctcaaaaaggcaagggtgggggccatgcg
gcgaccaatcgggcgcttccgccccggtcgctgtatctggacgccggcgactggaaccag
gccctggcgggtcgcgccgtgcggcggtttacgccgttctcgggcggcggcgaggatgcg
ggcggccgactgggtcggacctttgcggccgagcgggcgcaagacagcgtcaacctgttc
gaggcggtggcggcccatgctgcggcgctgaaggccgacggcaagcgggtgctgttcgcc
tcgtggaccgagggctcgtcggaacgtctggcgaccatgctggccgaccacggcctggat
catatcgtcgccgtgcgcgactgggccgatgtccagaccgcgccgaaggacctgtatctg
cgcggcgtcctgccggtcgagcatgggtttgcgacggacgaggtcgcggtcatttccgag
accgacatcctgggcgaccgtctggcgcggccacgcaagaagcggcgggcgtcgaacttc
ctggccgaggcttcggccctgacgaccggggacctggtggttcacctggatcacggcatc
gggcgctacgaggggctgaagacgctggacatccagcaggccccgcacgactgcctggag
ctggtgtacgccggtgagagcaaactctatctgccggttgaaaacattgatcttctgacc
cgatacggctcggattcagaaggcgcgcagctggaccggctgggcggcgccggctggcag
gcgcgcaagtcaaaggccaaggaacgcctgcgcgccatggccgaggggctgatcgcgctc
gccgccaagcgggcgctgcgcgagaccgacgcagtggtgccgccgccgggcctgttcgcc
gagttctgcgcccgctttccctatgaggagacggacgatcagctgaacgccatcggcgac
gtgctggaggacctgggcaagggcacgccgatggatcgcctgatctgcggcgacgtcggc
ttcggcaagaccgaggtggcgctgcgggcggccttcgtcgtggccatgacggggcaacag
gtggccattgtggcgccgaccaccctgctggcgcgccagcactacaagaccttcaccgaa
cggttcgccggctggcctgtgaaggtgcggcagctgtcgcggatggtggggggcaaggag
gcgtcagagacgcgggcggggctgaaggacggctcggtcgagatcgtcgtcggcacccat
gcggtgctgtccgaacaggtcggtttccgcgacctgggcctggtgattgtggacgaggag
cagcatttcggcgtcaagcacaaggagaagctgaagtcgctgcgggccgatgttcacctg
ctgaccctgaccgccacgccgatcccgcgcaccctgcagatggcgctgtccggcattcgc
gagatgtcgatcatcgccaccccgccggtcgatcgcctggcggtgcggacctatgtgacg
ccgtgggatccggtgctggtgcgcgaggccctgctgcgcgagaaatatcgggggggccag
gcctattatgtcgcgccgcgcctgaaggacctgccggccatcgagaaattcctgcgtgag
caggtgcccgaggtgaagttcgtcgttggccacggccagatgtcggcgacccagctcgag
gaggtgatgagcgccttctacgacggcgaatacgacgtcctggtctcgaccaccatcgtc
gagagcgggctggacatcccgaccgccaatacgctggtcgtgcaccgggccgacatgttc
ggcctggcgcagctgtaccagatccggggccgggtcggccgatccaaggcgcgggctttc
gcctatctgaccacggatgcggtcaagccgatgaccctgtcggccgagcggcgtctgcag
gtgctgcagtcgctggacaatctgggcgccggcttccagctggccagccacgacctggac
cagcgcggcggcggcaatctgctgggcgacgaacagtcgggccatatccgcgaggtgggc
gtcgaactgtaccagcagatgctggaggatgcggtcgccgagctgcgcgagaagggcgag
gggctgaacgtggatcgcggctggtcgccgtcgatcaatgtcggggcttccgtcctgatt
ccagaggaatatgtgccggacctgaatgtccgtctcagcctgtaccgccgcctgtccgac
gcggaacaggccgaggaccgcgaagccctggccgccgagctgatcgaccggttcggtccc
ctgccggacgaggcgcagcaactgctgaagatcgtcggcatcaagtccaactgccgccgc
gcctgtatcgagaagatcgacatcgggccgcgcggcgcggtgctgaccctgcgcgacaac
agcttccccaatcccattggattggttgggctgatccagaagaaccaggccttctggaag
atccggccggatcagaagatcgtcgtgtccggcgattggccgacggcggaagagcggctg
aaggtggcggaacggatcaccgccgacctggcgcgggtggcgggggcgtag
DBGET
integrated database retrieval system
