Bacillus megaterium NBRC 15308 = ATCC 14581: BG04_2349
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Entry
BG04_2349 CDS
T03825
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmeg
Bacillus megaterium NBRC 15308 = ATCC 14581
Pathway
bmeg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BG04_2349 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmeg03400
]
BG04_2349 (mfd)
Enzymes [BR:
bmeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BG04_2349 (mfd)
DNA repair and recombination proteins [BR:
bmeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BG04_2349 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
MFD_D3
UB2H
Motif
Other DBs
NCBI-ProteinID:
AJI20485
UniProt:
A0A0B6A6E9
LinkDB
All DBs
Position
2182765..2186295
Genome browser
AA seq
1176 aa
AA seq
DB search
MRGIRQQFEENKEIGAVVSSLEEGLKEQLVTGISGSARSVLMALLNEDKKYPLLVVTHNL
YQAQKVYEDLLHLLPEKDVFLYPVNDLVATEVGIASPELKAQRIEVLNYWSQHTGGVVVT
PLAGIRKLLPPKARWEQTQLPFQMGIDIDVDHYLKRLVELGYERASMVSAPGEFSVRGGI
IDIYPLTEELPVRIELFDTEIDSIRTFTIEDQRSQEQLKEISIGPATEIIVNQNEVAQGI
EELEAQLASTLQQVKNAALKATLTENIKGEIEQLRQGQLLENMFKYLSFFYESPASLLDY
LPEGGLVIFDETTRIQETSDQLETEEAEWITELLGQGQIVRDVQLSHKLPSLIQRAKHQF
LYLSLFLKHVSYTSPQNIINISCKQMQQFYGQMNLLKSEIERWKNANYTVVLLGADKERV
KKLEGVLADYDIDSSILDGNGQLVPGLVQIIEGDLQMGFELPMQKLAVLTEEELFKKRVK
KSKRRQKLSNAERIKSYSELNVGDYVVHVNHGIGRYLGMETLEINGNHKDYIHIKYEGSD
KLYVPVEQIDQVQKYVGSEGKEPKVYKLGGNDWKKVKRKVESSVQDIADDLIKLYAEREA
SKGYAFSPDGDLQREFETAFPYQETEDQLRSVQEIKKDMEHERPMDRLLCGDVGYGKTEV
AIRAAFKAVTDGKQVAILVPTTILAQQHYETIRERFQDYPINIGLLSRFRSRKQQQETIK
GLKNGTVDVVIGTHRLLSKDVIYKDLGLLVIDEEQRFGVTHKEKIKQMKANVDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNPVLVREAIERELARDGQVYFLYN
RVEDIERKAEEISMLVPDARVTYAHGKMNETELEAVILSFLEGEYDVIVSTTIIETGVDI
PNVNTLIVNNADKMGLSQLYQLRGRVGRSNRVAYAYFTYHKDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERRGSDGESVKFN
VEMNLDLDAYIPDQYITDGRLKIEMYKRFRGIEALEDIQELQDEMIDRFGEYPAEVEYLF
KVAETKVYATQNLVESILQSKQEISILLSEEASSTVDGQKLFMLGDQFGRMVSLGMEGKK
VKLVVNVKGLAQKEWLNIVYQLVKGVATVKKEQVTN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
ttgcgagggattagacagcaatttgaagaaaataaagaaattggagctgttgtcagcagc
ttagaagaaggtttgaaagaacagttagtaacgggaatttccggttcagctcgatctgta
ttaatggcactcttaaatgaggataaaaaataccctttattagtagtgactcataattta
tatcaagctcaaaaagtgtatgaagaccttttgcatcttttaccggaaaaagacgttttc
ttataccctgttaacgatttagttgctacagaagtggggattgcaagtccagaattaaag
gctcagcgaattgaagtactcaattattggagtcaacatacaggtggagtagttgtaaca
ccgcttgcaggaattcgaaagctgctgcctcctaaagcaagatgggagcaaacacagctg
ccgtttcaaatgggaattgacatcgacgttgatcattatttaaaaaggttagttgagttg
ggctatgagcgggcatctatggtttcagctccgggtgagtttagtgtgcgcggaggaatc
attgacatttatccgttaacagaagagctacctgtccgaattgaactatttgatacggag
attgattccattcgtacttttacaatcgaggatcaacgctctcaagagcagttaaaagaa
atttcaatcggtcctgctacggaaatcattgtgaaccaaaatgaagtggcccaaggaatt
gaagaactagaagcacagctggcttcgacgctgcaacaagtaaaaaacgcagcgctaaaa
gctaccttaacagaaaatattaaaggtgaaatcgaacagctgcgtcaaggtcagcttctt
gaaaatatgttcaagtatttatcattcttctacgaatcgcctgctagtttactagattat
ttaccagaaggcggccttgtcatctttgatgaaaccactcgaattcaagaaacgtctgat
cagcttgaaacagaggaagctgaatggataaccgaattattaggacaggggcaaattgtt
cgagacgttcaattatctcataagctcccatctcttattcagcgagcaaaacatcagttt
ttatacttatcgttatttttgaagcacgtatcgtatacgagtccgcaaaatattattaat
atttcatgtaagcagatgcagcagttttacggccaaatgaacttattaaaaagtgaaatt
gaacgttggaaaaatgctaattatacggtagtcctcttaggagcagataaagagcgcgtg
aaaaaacttgaaggtgtactagcagattatgatattgattcatctattttagatggaaat
ggtcagcttgtgccaggtcttgttcaaattattgaaggcgatttacaaatgggctttgaa
ctgccgatgcaaaaattagctgttttaaccgaggaagaattgtttaaaaaacgggtaaag
aaatcaaagcgtcgtcaaaagctttccaatgcagaacgtattaaaagctattcagagtta
aacgtaggtgactatgtcgttcacgtgaaccacggtattggccgttatttaggaatggaa
acgttagagattaacggtaatcataaagattatatccatatcaaatatgaaggctctgac
aagctgtacgttcctgttgaacagattgatcaagtacaaaaatatgtaggctctgaaggg
aaagagccaaaagtatataaacttggcggaaatgactggaagaaagtgaaacgaaaagtt
gagtcttctgttcaagatatcgctgatgacttaattaaactgtatgcagagcgtgaagca
agtaaaggttatgcattttcccccgatggcgatttacaaagagaatttgaaacagctttc
ccttatcaagaaaccgaagatcagcttcgttctgtacaagaaattaaaaaggatatggaa
catgaaagaccaatggatcgtttgctttgtggagacgttggatatggaaaaacagaagta
gccattcgtgctgcatttaaagctgtgacagatggaaaacaagtggctattttagtgcca
accactattttagctcagcagcactatgaaaccatccgtgagcgttttcaagactatcca
atcaacattgggctattgagccgctttcgcagtcgtaaacagcagcaagaaacaattaaa
gggctaaaaaacgggaccgtagatgtggtgattggtacacatcgtttactatctaaagac
gtgatttataaagatttaggattgttagttatcgatgaagagcagcgttttggtgtaacg
cacaaggaaaaaatcaagcaaatgaaagcaaacgttgatgtccttacacttacagcaaca
cctattccacgaacattacatatgtctatgttgggcgtaagggatttgtctgttattgaa
acgccgcctgaaaatcgttttccggttcaaacatatgtagtggagtataatccggtttta
gttcgtgaagcgattgagcgtgagttagcgcgtgatggccaagtttactttttatataat
cgcgtagaagatattgaacgaaaagcagaagaaatttcgatgctcgtgcctgatgctagg
gtaacgtatgcccacggaaaaatgaatgaaaccgaactcgaagcggttatcttaagcttt
ttagaaggcgaatatgacgtgattgtgagtacaaccattatcgaaacgggagtagatatt
cccaatgtaaatacgcttattgtcaataatgctgataagatgggattatcacaactgtat
caattaagagggcgtgtaggtcgttcaaaccgcgtggcatatgcgtactttacgtatcac
aaagacaaagtactgacagaagtagctgaaaagcgtctgcaagctattaaagaattcacc
gaattaggttctggttttaaaattgctatgcgtgatctttcaatacgtggtgccggaaac
ttactgggtgctcagcagcatggatttatcgattctgtcggtttcgatctctactcgcaa
atgcttaaagaagcgatagaggaaagacgcgggtctgacggagaaagtgtgaaatttaat
gtggaaatgaatctggacttagacgcatatattcctgatcagtacattacagacggccgc
ttgaaaattgagatgtataagcgctttagaggaattgaagcactagaagatattcaagaa
ttgcaggatgaaatgattgatcgttttggagagtatccggctgaggttgagtatttgttt
aaagtagctgaaacaaaagtatatgcaacgcagaacttagtagaatctattcttcagtca
aaacaagaaatttctattctgttgtctgaagaagcgagctcaacggtagacggccaaaaa
ttattcatgctaggtgatcaattcggcagaatggtcagcttaggtatggaaggcaagaaa
gtaaaattagtggttaatgtaaaaggacttgctcaaaaagaatggctcaatattgtgtat
cagttagtaaaaggagtagccactgttaaaaaagaacaagttacgaattaa
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