Botrimarina mediterranea: Spa11_16090
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Entry
Spa11_16090 CDS
T09862
Symbol
sigA_3
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
bmei
Botrimarina mediterranea
Pathway
bmei02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bmei00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Spa11_16090 (sigA_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmei03021
]
Spa11_16090 (sigA_3)
Transcription machinery [BR:
bmei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Spa11_16090 (sigA_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Sigma70_ner
NT_N
GlutR_dimer
Motif
Other DBs
NCBI-ProteinID:
QDV73413
UniProt:
A0A518K6I7
LinkDB
All DBs
Position
complement(1956814..1958694)
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AA seq
626 aa
AA seq
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MPPVATTTEPQLSLYTGPEEDVVEVAADAPDLLDAPAPAAEFTPDGRPSRMDTPTGPPAG
IPGGVDAALRRIVALARRQGCLYYHQVYNYLPDETYGTDQINALLSAVEGLGVELREPPG
TKPRFEETQVYVEGDRSSLLRDGLPTSSSDPIRMYLSQMAEIPLLTREEEINLAKKIELT
RKRFRRNLLRSFYALEATVKVLEKVQAGELPFDRTIKVSLTERLTKEQVSARLPHNLRTL
RALIEQQRADYALMVDRRVTEPSAKSEARQRYVRRREKMLSLVEELSLRTKRVSPLIKEL
RDYADRIDEVRRELAELKASGAPEDKVHSVRAELLQITKRVCESPASLRRRADMVARQYR
EFENTKRELSSGNLRLVVSIAKKYRNRGLSFLDLIQEGNTGLMRAVDKYEYRRGFKFSTY
ATWWIRQAITRAIADQARTIRIPVHMIDVLTKLRNTAKKLQQELGREPSYEEISIAAEVS
IEETERVLDIGRHPVSLDRPVGDGDDCSFGDFVEDHGTDNPSKLANNGLLRERIEELLKT
LTFREREIIRLRYGLADGYSYTLEEVGRIFKVTRERVRQIEAKAVAKLQHPVRSGMLASF
VPEAPEVEGFVIDPIDDEADTLQEAA
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atgcctccagttgcaaccaccaccgagccgcagctttcgctctacaccggtccggaagaa
gacgtcgtcgaagtcgccgctgacgcgcccgacttgctcgacgccccggcgcccgccgcc
gaatttacgcccgacggccgtccctctcggatggatacgcccaccggaccgcccgcgggc
atccccggtggcgttgacgccgcgctgcgtcgcatcgtcgccctcgcccgtcgccagggc
tgcctgtactaccaccaggtctacaactacctgccggacgagacctacggcaccgaccag
atcaacgccctgctgtcggccgtcgaaggcctcggtgtcgaactgcgtgagccgcccggg
accaagccccgcttcgaagagacgcaggtctacgtcgagggcgatcgctcgtcgctactg
cgtgacggattgccgacatcgtcgagcgacccaatccgcatgtacctctcgcagatggcg
gagatcccgctgctaacgcgtgaggaagagattaacctcgccaagaagattgagctcacc
cgcaagcggttccgccgaaatctgctccgctcgttctacgccctcgaggcaaccgtcaag
gtgctcgagaaggtccaggccggcgagctgccctttgaccgcaccatcaaggtgtcgctc
accgaacggctcaccaaggagcaggtctctgcccgcctgccgcacaacctgcggacgctg
cgggcgctgatcgagcagcaacgggccgactacgccttgatggtggaccgtcgcgtcacc
gagccctcggcgaagagcgaggcccgccagcgttacgtccgccgtcgcgagaagatgctc
tcgctggtcgaagagctgagcctccgcacgaagcgcgtcagcccgctgatcaaggagctg
cgtgactacgccgaccgcatcgacgaagtccgccgcgagctggccgagctgaaggcctcg
ggcgcgccggaggacaaggtgcactcggtgcgggccgaactcttgcagatcaccaagcgt
gtctgcgaaagcccggcgagcctccgccgccgcgccgacatggtcgcccggcagtaccgc
gagttcgagaacaccaagcgtgagctctcgagcggcaacctgcggttggtcgtctcgatc
gccaagaagtaccgcaaccgcggcctctcgttcctcgacctgatccaggaagggaacacc
ggcctaatgcgggcggtggataagtacgagtaccgccgcgggttcaagttcagcacgtac
gccacttggtggatccgccaagcgatcacccgcgctatcgccgatcaggcccggacgatc
cgcatcccggtgcacatgatcgacgtgctcaccaagctgcgcaatacggcgaagaagctc
cagcaggagttgggccgagagcctagctacgaggagatttcgatcgccgcagaggtgtcg
atcgaagagaccgaacgcgtgctcgacatcggccgtcatccggtgagcctcgaccgcccc
gtcggcgacggcgacgactgctccttcggcgacttcgtcgaagaccatggcaccgacaac
ccgtcgaagctcgccaacaacggcctcttacgtgagcgcatcgaagagctgctcaagacg
ctcaccttccgcgagcgtgagatcatccgcctgcgttacggcctcgccgacggctacagc
tacacgctggaagaggtcggtaggatcttcaaggtgacgcgcgagcgtgtccgccagatc
gaggccaaggccgttgcaaaactccagcacccagtccgtagcgggatgctcgcaagcttc
gtccccgaggcgccggaggtcgaaggcttcgtgattgatccgatcgacgacgaggccgac
acgctgcaagaagcggcgtga
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