Botrimarina mediterranea: Spa11_18380
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Entry
Spa11_18380 CDS
T09862
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bmei
Botrimarina mediterranea
Pathway
bmei03420
Nucleotide excision repair
bmei03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bmei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Spa11_18380
03430 Mismatch repair
Spa11_18380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmei03400
]
Spa11_18380
Enzymes [BR:
bmei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Spa11_18380
DNA repair and recombination proteins [BR:
bmei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Spa11_18380
MMR (mismatch excision repair)
Other MMR factors
Spa11_18380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
UvrD_C
AAA_30
Viral_helicase1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDV73639
UniProt:
A0A518K772
LinkDB
All DBs
Position
complement(2227246..2228751)
Genome browser
AA seq
501 aa
AA seq
DB search
MTRSPIAKPCYEVAGAGAGKTHGMVETVAASLDSLSPCRSLAVVAFTHAATRVIRERLAK
RVAIPPNVFVGTTHAFVARFILRPFGRLLGDIPEGVIYSEVAAKPGMKPRALVAYRKAVL
KKGVMDYSDMLSKSAALVEKPLVRSRVGGRLQFLFVDEFQDISPALLRTLEALRKEKKTA
IRVVGDPEQYINGFTYKDAGTKRPDADVLPFAKFAKKATTEERCENHRANGELVRFSNQF
RSDFNQQSVAGDRGEDAVYFVRPTDLKEVVEAFRSLTDDVRLAGDARKRLYLARKNKFFD
EVRSEFDIVHVGKEAQRGKSLHADARDLLSVAVGKQERDLVRDLDGGLVGWRRTACRLLF
RLGEREMGFDEFKSFVKEELGMKVSESREKHLLSMVADLQGALGGCGRGSEAVELSASLN
KAKGLEADAVLLVAETQAQLLKFFETDADARQSDKSDVCRLGYVGATRARERLVLACVKP
IDRKAEGFLAGLGVKLQLADD
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgacccgctcgcccatcgcaaagccgtgctacgaggtcgccggagcgggggccggcaag
acccacggtatggtcgagacggtggcggccagcctcgatagcctgtcgccctgccggtcc
ctggcggtggtggcgttcacccacgccgcgacgcgggtcatccgggagcgcctcgccaaa
cgggtagcgataccgccgaacgtcttcgtcggcacgacgcacgcgttcgtcgcccggttt
attctgagaccgttcgggcggctgctgggagatatccccgaaggcgtcatctactcagag
gtcgcggcaaagccgggcatgaagccccgggcgctcgtcgcctaccggaaggccgtgctc
aagaagggtgtgatggactactcggacatgctgagcaagtcggcggcccttgttgaaaag
ccgctggtgcggtcgcgggttgggggccgtctgcagttcctgttcgtcgacgagttccag
gacatctcgcccgcgttgctgcgtacgctcgaagcgctccgcaaggagaagaagactgct
atccgtgttgttggagaccccgagcagtacatcaacggcttcacctataaggacgcgggg
accaaacgaccggacgccgatgtcctgccattcgcgaagttcgccaagaaggccacgacc
gaggaacgttgcgagaaccaccgcgccaacggtgagctggtgaggttctccaatcagttc
cgcagcgacttcaatcagcagagcgtggctggagaccggggcgaggacgctgtgtacttt
gtccgtccgacagatctgaaagaggtcgttgaagcgttccgttcgttgaccgacgatgtt
cgtctagccggggacgccaggaagcgcttgtacctcgcgagaaagaacaagttcttcgac
gaggtgcggtcagagttcgacatcgtccacgtcggcaaagaggcccaacgcggcaagtct
cttcacgccgacgctcgcgatttgctcagcgtggcggtcggcaagcaagagcgcgacttg
gtgcgggacctggatggcggactggtcggttggcgtcggactgcctgtcgcttgctgttc
cgtcttggcgagagagagatggggttcgacgagttcaaaagcttcgtgaaggaagaactt
gggatgaaggtcagcgagtcgcgtgagaaacacttgctgtcgatggtcgcggatcttcaa
ggcgccctcggcgggtgcggacgagggagcgaggcggttgaactgagcgcgtcgctcaac
aaggcgaagggtctcgaagcagacgccgtgctattggtggcggagacccaagcgcagctc
ttaaagttcttcgaaaccgacgccgacgctcgccagtccgacaagtccgatgtttgccgc
ttgggctacgtgggggcaacccgtgcgcgggagcgactggtgctggcgtgcgtgaaaccg
atcgacaggaaggctgaagggttcctggcaggcctcggggtgaaactgcagctcgccgac
gactga
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