Botrimarina mediterranea: Spa11_31500
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Entry
Spa11_31500 CDS
T09862
Symbol
rny_3
Name
(GenBank) Ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
bmei
Botrimarina mediterranea
Pathway
bmei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spa11_31500 (rny_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmei03019
]
Spa11_31500 (rny_3)
Messenger RNA biogenesis [BR:
bmei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Spa11_31500 (rny_3)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
dUTPase
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
UPF0242
Motif
Other DBs
NCBI-ProteinID:
QDV74941
UniProt:
A0A518KAX1
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Position
complement(3987668..3989218)
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AA seq
516 aa
AA seq
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MQTLIYAAVALVAALMGMGVVLFLGRLRKWDAEKEAAQILERADLEAKNRLKDAAIEAKE
MAITEKSRIEEQLADVRDKLHERERHLDKRDDAVTSREDQLAKQEKMVESNQRRLTEKLA
DVDVRTKELENLLDVQRQALHKASGLGPEEARKMLLERLDAELSHEQGVRVMEAEKRLAE
KVDAKAKEMLITSIQRFAAAHTAESTTSTVDIPSDEMKGRIIGREGRNIRTFEKETGVDV
IIDDTPGVVIVSSFDPVRRQIAQLALTKLIADGRIHPSRIEELVVETTAEVEKLLVKYGE
EAAQEVDIRGLHPKAIQLLGRLYYRTSYSQNVLRHSIEVAFVAGMIAEELGYDGDLARRA
GLLHDIGKAADHDTEGGHPKIGADLLKRYGENDVVVHAALGHHDDIRVDMPYTVIVAAAD
ACSASRPGARRETLDRYIKRMQELEAIASGFTGVHQAFAIQAGREVRVIAKTNETTDESA
AKVCRDIAKAFEEQLTYPGEIRVTMIRETRFTEMAK
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacgttgatctacgccgcggtggcccttgtcgccgccctgatgggaatgggcgtc
gtcctattccttggtcgactccgcaagtgggacgccgagaaagaggccgcccaaattctc
gagcgggccgacctcgaagccaagaatcgtctgaaggacgcggcgatcgaggccaaagaa
atggccatcaccgagaagtcgcgcatcgaggagcagcttgccgacgtacgcgacaagctc
cacgaacgcgagcggcacctcgacaagcgtgacgacgccgtgacctcacgtgaggaccag
ctcgccaagcaagagaagatggtcgagagcaaccagcgccgcctgacggaaaagctggcc
gatgtcgatgtccgtacgaaagaactcgagaacctcctcgacgtccagcggcaagccctg
cacaaggccagcgggctggggcccgaagaggcccgcaagatgctcctcgagcggcttgac
gccgaactgtcgcacgagcagggcgtccgcgtcatggaggctgagaagcgtctggctgag
aaggtcgacgccaaggccaaggaaatgctgatcacctcgatccagcgtttcgccgccgcg
cacacggccgagtcgaccaccagcacggtcgatatccccagcgacgaaatgaagggccgg
atcattggccgcgagggtcgcaacatccgcaccttcgaaaaggagaccggcgttgacgtc
atcatcgacgatacgccgggcgtggtgatcgtcagctcatttgaccctgtgcggcggcag
atcgcgcaactcgcgctgacgaagctcatcgccgacggccgcatccatcccagccgcatc
gaagagctggtcgtcgagacgaccgccgaggtcgagaagctgctggtgaagtacggcgaa
gaagcggcccaagaagtcgatatccgtgggctgcaccccaaggcgatccagctgctgggg
cgcctctactaccgcaccagttacagccaaaacgtgttgcgacactcgatcgaggtggcg
ttcgtcgccggcatgatcgccgaagagctgggctacgatggcgacctcgctcgacgtgcg
ggcctgctgcacgacatcggcaaagcggccgaccacgacaccgagggcggccatccgaag
atcggcgccgacctactgaaacgctatggcgagaacgatgtcgttgtgcacgccgccctc
ggccatcatgacgatatccgcgtcgatatgccgtacaccgtgatcgtcgccgcggcggac
gcctgcagcgcttcgcggcccggcgcgcggcgcgagacgctcgaccgttacatcaagcgg
atgcaggagctcgaagcgatcgcctcaggcttcaccggcgtccaccaagctttcgcgatc
caagcgggccgcgaggtgcgtgtcatcgccaaaacgaacgagacgaccgacgagtccgcc
gccaaggtctgccgcgacatcgccaaagcgttcgaagaacagctcacctaccccggcgaa
atccgcgtgacaatgatccgcgagacccgctttactgagatggcaaagtga
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