KEGG   Botrimarina mediterranea: Spa11_31500
Entry
Spa11_31500       CDS       T09862                                 
Symbol
rny_3
Name
(GenBank) Ribonuclease Y
  KO
K18682  ribonucrease Y [EC:3.1.-.-]
Organism
bmei  Botrimarina mediterranea
Pathway
bmei03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bmei00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Spa11_31500 (rny_3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bmei03019]
    Spa11_31500 (rny_3)
Messenger RNA biogenesis [BR:bmei03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     Spa11_31500 (rny_3)
SSDB
Motif
Pfam: RNase_Y_N HD KH_1 HDOD dUTPase KH_2 KH-I_KHDC4-BBP KH_KhpA-B UPF0242
Other DBs
NCBI-ProteinID: QDV74941
UniProt: A0A518KAX1
LinkDB
Position
complement(3987668..3989218)
AA seq 516 aa
MQTLIYAAVALVAALMGMGVVLFLGRLRKWDAEKEAAQILERADLEAKNRLKDAAIEAKE
MAITEKSRIEEQLADVRDKLHERERHLDKRDDAVTSREDQLAKQEKMVESNQRRLTEKLA
DVDVRTKELENLLDVQRQALHKASGLGPEEARKMLLERLDAELSHEQGVRVMEAEKRLAE
KVDAKAKEMLITSIQRFAAAHTAESTTSTVDIPSDEMKGRIIGREGRNIRTFEKETGVDV
IIDDTPGVVIVSSFDPVRRQIAQLALTKLIADGRIHPSRIEELVVETTAEVEKLLVKYGE
EAAQEVDIRGLHPKAIQLLGRLYYRTSYSQNVLRHSIEVAFVAGMIAEELGYDGDLARRA
GLLHDIGKAADHDTEGGHPKIGADLLKRYGENDVVVHAALGHHDDIRVDMPYTVIVAAAD
ACSASRPGARRETLDRYIKRMQELEAIASGFTGVHQAFAIQAGREVRVIAKTNETTDESA
AKVCRDIAKAFEEQLTYPGEIRVTMIRETRFTEMAK
NT seq 1551 nt   +upstreamnt  +downstreamnt
atgcaaacgttgatctacgccgcggtggcccttgtcgccgccctgatgggaatgggcgtc
gtcctattccttggtcgactccgcaagtgggacgccgagaaagaggccgcccaaattctc
gagcgggccgacctcgaagccaagaatcgtctgaaggacgcggcgatcgaggccaaagaa
atggccatcaccgagaagtcgcgcatcgaggagcagcttgccgacgtacgcgacaagctc
cacgaacgcgagcggcacctcgacaagcgtgacgacgccgtgacctcacgtgaggaccag
ctcgccaagcaagagaagatggtcgagagcaaccagcgccgcctgacggaaaagctggcc
gatgtcgatgtccgtacgaaagaactcgagaacctcctcgacgtccagcggcaagccctg
cacaaggccagcgggctggggcccgaagaggcccgcaagatgctcctcgagcggcttgac
gccgaactgtcgcacgagcagggcgtccgcgtcatggaggctgagaagcgtctggctgag
aaggtcgacgccaaggccaaggaaatgctgatcacctcgatccagcgtttcgccgccgcg
cacacggccgagtcgaccaccagcacggtcgatatccccagcgacgaaatgaagggccgg
atcattggccgcgagggtcgcaacatccgcaccttcgaaaaggagaccggcgttgacgtc
atcatcgacgatacgccgggcgtggtgatcgtcagctcatttgaccctgtgcggcggcag
atcgcgcaactcgcgctgacgaagctcatcgccgacggccgcatccatcccagccgcatc
gaagagctggtcgtcgagacgaccgccgaggtcgagaagctgctggtgaagtacggcgaa
gaagcggcccaagaagtcgatatccgtgggctgcaccccaaggcgatccagctgctgggg
cgcctctactaccgcaccagttacagccaaaacgtgttgcgacactcgatcgaggtggcg
ttcgtcgccggcatgatcgccgaagagctgggctacgatggcgacctcgctcgacgtgcg
ggcctgctgcacgacatcggcaaagcggccgaccacgacaccgagggcggccatccgaag
atcggcgccgacctactgaaacgctatggcgagaacgatgtcgttgtgcacgccgccctc
ggccatcatgacgatatccgcgtcgatatgccgtacaccgtgatcgtcgccgcggcggac
gcctgcagcgcttcgcggcccggcgcgcggcgcgagacgctcgaccgttacatcaagcgg
atgcaggagctcgaagcgatcgcctcaggcttcaccggcgtccaccaagctttcgcgatc
caagcgggccgcgaggtgcgtgtcatcgccaaaacgaacgagacgaccgacgagtccgcc
gccaaggtctgccgcgacatcgccaaagcgttcgaagaacagctcacctaccccggcgaa
atccgcgtgacaatgatccgcgagacccgctttactgagatggcaaagtga

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