Botrimarina mediterranea: Spa11_31930
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Entry
Spa11_31930 CDS
T09862
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
bmei
Botrimarina mediterranea
Pathway
bmei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spa11_31930 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmei03019
]
Spa11_31930 (pnp)
03016 Transfer RNA biogenesis [BR:
bmei03016
]
Spa11_31930 (pnp)
Enzymes [BR:
bmei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Spa11_31930 (pnp)
Messenger RNA biogenesis [BR:
bmei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Spa11_31930 (pnp)
Transfer RNA biogenesis [BR:
bmei03016
]
Prokaryotic type
tRNA degradation factors
Spa11_31930 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH_KhpA-B
KH-I_KHDC4-BBP
KH_2
Motif
Other DBs
NCBI-ProteinID:
QDV74984
UniProt:
A0A518KB10
LinkDB
All DBs
Position
4044802..4046928
Genome browser
AA seq
708 aa
AA seq
DB search
MQKHIVERQIGGETIRIETGTLAKQAAGAVLVSLNDTVVLTAVATSAPRPGIDFFPLTCD
YRERTAAAGKFPGGFMKREGRPTTKETLTSRLIDRPIRPMFAAGFNDEVQIQSFVMSSDR
QTDGDVLAMIGASAALTISTLPFEGPLGSLRVGKVDGKLVAFPTAEQLEFSELDLIVSGT
KDAILMIEGFAREMPEDEMTEALLYAHKLIGELCELQLELREKVGTPASSYVSPEPDGIF
EKLEAAYGEKLKAAKQIVGKQDRAEACSALKAEALAELVPDPKAEDALDIGKVKSAWHDL
EAKVIRQTILEGKRPDGRDSKTLRPIHCEVDLLPRVHGSALFQRGETQSLVTITLGTGRD
EQRVDGLFDEYSKRFMLDYNFPSFSVGECRPIRGPGRREIGHGMLAERSVNPVLPDHDSF
PYTIRVISDILESNGSSSMASVCAATLGLMAAGVPITNPVAGISVGLVKEGEDWTLLTDI
LGDEDHFGDMDFKIAGTQNGITGIQLDLKIMGISEEIIRATLAQSRDARIEILRSMLSAI
QRPRESTASSAPRLVRTSIDPQKIGLLIGPGGKTIRGIQEDCGVQIDVEEDGTITIAGPD
QETVTAGLGRVEALTASVQVGRVYKGKVSSIKDFGAFVEILPGKDGLCHISELSDGYVAS
VGDICKVGDVMEVKVIAVDDQDRVKLSRRAAMADAAGPAEAEPAEADA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
ttgcagaaacacatcgttgaacggcagatcggcggcgagacgatccgcatcgagaccgga
accctagccaagcaggccgccggcgccgtcctggtgagcctgaacgacaccgtcgtgctg
accgccgtcgccaccagcgccccgcgtcccggcatcgacttcttcccgctcacttgcgac
taccgcgagcggaccgccgcggctggcaagttccctggcggctttatgaagcgcgaaggg
cgtcccaccaccaaggagacgctcaccagccgcctgatcgaccgcccgatccgcccgatg
ttcgcggccggattcaacgacgaggtccagatccaatcgttcgtcatgtcgagcgaccgt
cagaccgacggcgacgtgctggcgatgatcggcgcctcggccgccctgacgatctcgacg
ctgccgttcgagggcccgctgggctcgctccgcgtcggcaaggtcgacggcaagctggtc
gcattcccgaccgccgagcagctggagttcagcgagctcgacctgattgtgtcgggcacg
aaggacgcgatcctgatgatcgagggcttcgcccgcgagatgcccgaagacgagatgacc
gaggccctgctgtacgcccacaagctcatcggcgagctgtgcgagttgcagctcgaacta
cgtgagaaggtcggcacgccggccagcagctacgtctcgcccgagcccgacggcatcttc
gagaagctcgaagccgcttacggcgagaagctcaaggccgccaagcagatcgtcggcaag
caagatcgcgccgaggcgtgcagcgcgctgaaggccgaggccctggccgaactggtcccc
gacccgaaggccgaggacgccctcgacatcggcaaggtcaagagcgcgtggcacgacctc
gaagcgaaggtcatccgccagacgatcctcgaagggaagcgtcccgacggccgcgactcg
aagaccctgcgtccgatccactgcgaagtggacctgctgccgcgcgtccacggctcggcc
ctgttccagcgtggcgagacccagtccttggtgaccatcaccctgggcaccggccgcgac
gagcaacgcgtcgatggcctcttcgacgagtacagcaagcggttcatgctggactacaac
ttcccgagcttctcggtcggcgagtgccgcccgatccggggacccggtcgccgcgagatc
ggccacggcatgctcgccgagcggtcggtcaacccggtgctgccggaccacgactcgttc
ccctacacgatccgcgtgatctccgacatcctcgagtcgaacggctcgagctcgatggcc
tcggtctgcgccgccaccctgggtctgatggccgccggcgtgccgatcaccaacccggtg
gcgggcatctcggtcggcttggtgaaggaaggcgaggattggactctgctcaccgacatc
ctcggcgacgaggaccacttcggcgacatggacttcaaaatcgccggcacccagaacggc
atcacgggcatccagctcgacctgaagatcatgggcatcagcgaggagatcatccgcgcg
acgctcgctcagagccgtgacgcccggatcgagatcctccgcagcatgctctcggccatt
cagcggccgcgtgagtcgaccgcttcgtcggcgccgcgtctggtgcggacctcgatcgac
ccgcagaagatcggcctcctcatcggccccggcggcaagacgatccgcggcatccaagag
gactgcggcgtgcagatcgacgtggaagaggacggcacgattacgatcgccggccccgac
caagagaccgtcaccgccggtctcggccgagtcgaggcgctcaccgcgagcgtccaggtc
ggccgcgtctacaaggggaaggtgtcgagcatcaaggacttcggcgcgttcgtcgagatc
ctccccggcaaggacggcctgtgccacatcagcgagctctccgacggctacgtcgcgagc
gttggcgacatctgcaaggtgggcgacgtcatggaggtcaaggtcatcgccgtcgatgac
caagaccgcgtgaagctcagccgccgcgccgcaatggccgacgccgccggccccgccgag
gccgagcccgccgaagcggacgcctga
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