Botrimarina mediterranea: Spa11_37010
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Entry
Spa11_37010 CDS
T09862
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bmei
Botrimarina mediterranea
Brite
KEGG Orthology (KO) [BR:
bmei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bmei03016
]
Spa11_37010 (rtcB)
Enzymes [BR:
bmei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Spa11_37010 (rtcB)
Transfer RNA biogenesis [BR:
bmei03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Spa11_37010 (rtcB)
Prokaryotic type
tRNA splicing ligases
Spa11_37010 (rtcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QDV75483
UniProt:
A0A518KCF5
LinkDB
All DBs
Position
complement(4685993..4687432)
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AA seq
479 aa
AA seq
DB search
MNRKQLEKLGVPPACVPVAIRCLSTAAEKGTGFGLKGKRAKESITALLADADAFAADPVW
ADFAAALKEHHDERVGEPDRPPVHYTAWECPTAEDAIDPGAHDQMRAACRVPSAVGAALM
PDAHIGYGLPIGGVLACENAVIPYAVGVDIACRMKLSVLDMPVESLATRRNAYRESLEKG
TRFGVGVEHTPRQQHDVMDLDWNVTRITREKKDTAWKQLGTSGSGNHFVEFGELVVDERS
DDLGLDPGRYVALLSHSGSRGAGAAVCSTYSQIAQRLLPKRYAEFGRLGWLSLDSEEGQA
YWAAMNLMGEYAAANHAVIHRLVAKLLGAHVVGGVENHHNFAWKETHNPDGRGEREVIVH
RKGATPAAAGELGVIPGSMGTPAFVVRGRGVAASLKSASHGAGRRMSRRQANDTFRFGAE
QKRLAADGVEVLAAGADEVPGVYKDIHAVMAAQQDLVDVLARFEPRLVKMCGDGSRAED
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaaccgcaagcaactcgaaaaactcggcgtcccgccggcgtgcgtgcccgtcgccatc
cgctgtctctcgaccgcggcggagaagggaaccggcttcggcctcaaggggaaacgcgcg
aaggagtcgatcacggcgctgcttgcggacgccgacgcgttcgcggccgaccccgtgtgg
gccgacttcgccgcggcgctgaaggagcaccacgacgaacgcgtgggcgaacccgatcgg
ccgccggttcactacacggcttgggagtgcccaacggcggaagacgccatcgatcccggc
gcgcacgaccagatgcgcgcggcgtgtcgggtcccgtcggcggtcggcgctgcgctgatg
cccgacgcgcatatcggctacggcctgccgatcggcggcgtgctcgcttgcgagaacgcg
gtcatcccctacgcggtcggcgtggacatcgcttgtcgcatgaagctgtcggtgctcgac
atgccggtcgagtcgcttgcgacgcgtcgcaacgcctaccgcgaatcgcttgagaagggg
acgcgcttcggcgtcggcgtcgagcacacgccgcggcagcagcacgacgtgatggacctc
gactggaatgtcacccgcattacgcgcgagaagaaggacactgcctggaaacagctcggc
acgagcggctcgggcaatcacttcgttgagttcggcgagctggtcgttgacgaacgctcg
gatgaccttggactcgacccgggacgctacgtcgcgctgctcagccacagcggcagccgc
ggcgccggggcggccgtgtgcagcacgtacagccagatcgcgcagcgcctgttgccgaaa
cgttacgcggagtttggtcgcttgggttggctgtcgctcgactccgaagaggggcaggct
tactgggcggcgatgaacctgatgggcgagtacgccgcggcgaaccacgcggtgatccat
cgcctcgtcgccaagctcctcggcgcccacgtcgtcggcggcgtggagaaccaccacaac
tttgcctggaaagagacgcacaaccccgatggccgtggcgaacgcgaggtgatcgtgcat
cgcaagggcgccaccccggcggcggcgggcgaactcggcgtgatccccggctcgatgggg
acgccggcgttcgttgtccgtggccgcggcgtggcggcgagcctcaagagcgcgtcgcac
ggggccggacgtcgcatgagccgccgccaggcgaacgacaccttccgcttcggcgccgag
cagaagcggctcgctgccgacggcgtcgaggtcctcgccgccggcgccgacgaagtgccg
ggcgtctacaaagacatccacgccgtaatggccgcgcagcaagaccttgtcgatgtgctc
gcccgcttcgagccccgcctggtaaagatgtgcggcgacggcagccgggcggaggactga
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