Botrimarina mediterranea: Spa11_41980
Help
Entry
Spa11_41980 CDS
T09862
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bmei
Botrimarina mediterranea
Pathway
bmei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Spa11_41980 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmei03019
]
Spa11_41980 (cshA)
03009 Ribosome biogenesis [BR:
bmei03009
]
Spa11_41980 (cshA)
Enzymes [BR:
bmei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Spa11_41980 (cshA)
Messenger RNA biogenesis [BR:
bmei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Spa11_41980 (cshA)
Ribosome biogenesis [BR:
bmei03009
]
Prokaryotic type
rRNA helicases
Spa11_41980 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QDV75975
UniProt:
A0A518KDW3
LinkDB
All DBs
Position
5321352..5322728
Genome browser
AA seq
458 aa
AA seq
DB search
MATAQLEDTLTDNDTFELDPSATEPTVTARFDELGLSESMLATLDSIGYETPSPVQAGVI
PVALSGRDVLGQARTGTGKTASFAIPILETMEDRGKGAPPQAIVLVPTRELAVQVTGEFQ
RLCGERKVRCVAVYGGKPIKAQISKLERGADVVIGTPGRVLDHIGRRTIDLKSLRVVVLD
EADRMLDIGFRPDIEKILRQCPDRRQTLLLSATVAPPVKRLAERYMHEPTMLDFSPKSKS
VDMIEQHFFTVDGDRKFDLLNRLLERENPSQTIVFCRTKRGCDKIHERLSKKRKGVGCIH
GDLPQGARDSVMKAFRAEEITLLVATDVVGRGIDVTSISHIINYDIPQSSDDYVHRVGRT
GRMGREGVAYTFVTREEGEELTRIEMLINKVLIEDKIEGFEAARPAEKRAAAAVKFFGAG
VQSEANEEAEAAETPAETAAPKPAPFGRRGRTKHRRGL
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
gtggcgacagctcaattggaagacacactcaccgataacgacactttcgaactcgatccc
tccgccaccgagcccaccgtaaccgcacggttcgatgagcttggtctctcggagtcgatg
ctggcgacgctcgactcgattggctacgagacgccctcgccggtccaggccggcgtaatc
ccggtcgctctcagcggccgcgacgtgctcggccaagcccgcaccggcaccggcaagacg
gcgtcgttcgcgatcccgatcctcgagacgatggaagaccgcggcaaaggcgcgccgccc
caggcgatcgtcctcgtgccgacgcgcgaattggccgtccaggtcaccggcgagttccaa
cggctctgcggcgaacgtaaggtgcgctgcgtcgccgtctacggcggcaagccgatcaag
gcgcagatctccaagctcgagcgcggcgccgacgtggtgattggcacgccgggccgggtg
ctcgaccacatcggtcggcggaccatcgacctgaagtcgctgcgggtcgtcgtgctcgac
gaggcggaccggatgctcgacatcggtttccgccccgacatcgagaagatcctccgccag
tgccccgacaggcggcagacactgctgctctcggcgacggtggcgccgcccgtcaagcgg
ctcgccgagcgctacatgcacgagccgacgatgctcgacttctcgccgaagtcgaaatcg
gttgacatgatcgagcagcacttcttcacggtcgatggcgaccgcaagttcgatctgctc
aatcggttgctggagcgcgaaaacccgtcgcagacaatcgtcttctgccgcaccaagcga
ggctgcgacaagatccacgagcggctgagcaagaagcggaaaggggtcggctgtatccac
ggcgacctgccgcagggcgcccgcgacagcgtgatgaaggccttccgcgccgaggagatc
accctgctcgttgcgaccgacgtcgtcggccgcggcatcgacgtcaccagcatctcgcac
atcatcaactacgacatcccccagtcgtcggacgactacgtccaccgcgtcggccgcacc
ggccggatgggccgcgagggcgtcgcctacacgttcgtgacccgtgaagaaggtgaagag
ctcacccggattgagatgctcatcaacaaggtgttgatcgaggacaagatcgagggcttc
gaggccgcacggcccgccgagaaacgcgcggcagcggccgtcaaattcttcggagccggc
gtgcagtccgaggcgaacgaagaagcggaagccgccgaaacgcccgccgaaaccgccgcg
ccgaagcccgcgccgtttggtcgccgcgggcggacgaagcaccgccgcgggttgtaa
DBGET
integrated database retrieval system
