Botrimarina mediterranea: Spa11_42880
Help
Entry
Spa11_42880 CDS
T09862
Symbol
sigA_5
Name
(GenBank) RNA polymerase sigma factor SigA
KO
K03086
RNA polymerase primary sigma factor
Organism
bmei
Botrimarina mediterranea
Pathway
bmei02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bmei00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Spa11_42880 (sigA_5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmei03021
]
Spa11_42880 (sigA_5)
Transcription machinery [BR:
bmei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Spa11_42880 (sigA_5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GAS
Tweety
CYP38_PsbQ-like
V_ATPase_I
NET2A_C
Fib_alpha
KIF9
Mis12
Motif
Other DBs
NCBI-ProteinID:
QDV76064
UniProt:
A0A518KE42
LinkDB
All DBs
Position
complement(5435738..5437309)
Genome browser
AA seq
523 aa
AA seq
DB search
MYDALLDNDLDDAVDPELGGHRSARDEDSGDDEASLRSAVTAGARRDDEPDDDDEDGTGL
FDGEAADSWSDDPVRMYLTQMGEIPLLTRKEEICLARRIEVTRTAFRRKLLACDYVARAA
YRTLDRVQKGELPFDRTVQVSVTDRLEKDQILGRLPHNLKTLQVLLDQNADDYRLATSKS
ANMKARQEAWKRLGRRRCRVVKLIEELGLRTQRIEPMINELRKFHRRVEQLRSQMEQMKK
DRRPMSERKPVIQEYRSILRSLQETPTSLRNRVRQLRRVHTEYQRAKRGLSEGNLRLVVS
IAKKYRNRGLSFLDLIQEGNAGLMRAVDKFEYRRGFKFCTYATWWIRQAITRAVADQSRT
IRIPVHMVETMSRVRNVSRMLLQKLGREPTLEETAKAADCTIDEARRVLAMSRYPISLDR
PVGNSEDSQFGDLLPDNGAESPANGAAQEMLRGRITDVLKTLSYREREIIKLRYGLGDGY
SYTLEEVGHIFKVTRERIRQIEAKAVRKLQQPSRSAELVGFLD
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
ttgtacgacgcactattggacaacgacctggacgacgccgtggaccccgagctgggaggc
catcggtccgcccgcgacgaggactcgggcgacgacgaggcgtccctgcgttctgccgtc
accgccggcgcccgccgcgacgacgagcccgatgacgacgacgaggacggcaccggcctc
ttcgacggcgaggcggccgactcttggtcggacgaccccgtccgcatgtacctgacgcag
atgggcgagatccccttgctcacccgcaaggaagagatctgcctggcccgtcgcatcgag
gtcacgcgcaccgcgttccgccgcaagttgctggcctgcgactacgtggcccgcgccgcc
taccggacgctcgaccgcgtccagaagggcgagctccccttcgaccgcacggtgcaggtg
agcgtcaccgaccggcttgagaaggaccagatcctcggccgcctgccgcacaacctgaag
acccttcaggtgctgctggaccagaacgccgacgactaccgcctggcgaccagcaagtcg
gccaacatgaaggcccgccaggaagcctggaagcgcctcggccgccggcgttgccgcgtc
gtaaagctgatcgaagagctcggcctccgcacgcagcggatcgagccgatgatcaacgag
ctgcgaaagttccaccgccgcgtcgagcagctccgttcgcagatggagcagatgaagaag
gaccgtcggccgatgtccgagcgcaagccggtcattcaggagtaccgttcgatcctccgt
tcgctgcaagagacgcccacgagcctgcggaaccgtgtccgccagctgcgccgcgtccac
accgagtaccaacgcgccaagcgcggtctctccgaaggcaacctacgtctggtggtgtcg
atcgccaagaagtaccgcaaccgcggcctgtcgttcttggacctgatccaagagggcaac
gccggcctgatgcgggccgttgataagttcgagtaccgtcgcggcttcaagttctgtacg
tacgcaacttggtggatccgtcaggcgatcacccgcgccgtcgcggatcagagccgcacg
attcgcatcccggttcacatggtcgagaccatgagccgcgtgcggaacgtgtcgcgcatg
ctgctacagaagctgggccgcgagccgacgctcgaggagaccgccaaggcggccgactgc
acgatcgacgaggcgcgtcgcgtcctggcgatgagccgttacccgatcagcctcgaccgc
ccggtcggcaacagcgaggacagccagttcggcgacctcctgcccgacaacggcgccgag
agccccgccaacggcgcggcccaagagatgctccgcggccggatcaccgatgtcctcaag
acgctcagctaccgcgagcgcgagatcatcaagctccgttacggcctaggcgacggctac
agctacacgctggaagaagtgggccacatcttcaaagtgacccgcgaacgcatccgccaa
atcgaagccaaggcagtccgcaagctgcaacagccaagccgctcggcggagttggtgggc
ttcttggattaa
DBGET
integrated database retrieval system
