Botrimarina mediterranea: Spa11_44750
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Entry
Spa11_44750 CDS
T09862
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bmei
Botrimarina mediterranea
Pathway
bmei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bmei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Spa11_44750 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmei03021
]
Spa11_44750 (rpoC)
03400 DNA repair and recombination proteins [BR:
bmei03400
]
Spa11_44750 (rpoC)
Enzymes [BR:
bmei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Spa11_44750 (rpoC)
Transcription machinery [BR:
bmei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Spa11_44750 (rpoC)
DNA repair and recombination proteins [BR:
bmei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Spa11_44750 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
BSH_YknX
BSH_RND
BSH_LcnD
PA2201_N
Motif
Other DBs
NCBI-ProteinID:
QDV76250
UniProt:
A0A518KEN5
LinkDB
All DBs
Position
complement(5646534..5650862)
Genome browser
AA seq
1442 aa
AA seq
DB search
MSLLESSNYDRINDYASVKISLARPHDIRSWSFGEVKKPETINYRTYRPEKDGLFCERIF
GPEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPIVHIWFFKAMPS
RLGSLLAMKTTSLEKVIYFQDYVVVEPGDTPLKHQQLLTEEEYRTAREQYGEGSFDADMG
AEAVRKLLMQLDLVKLSETLREELKTTGSKQKAKDLINRLKTVESIRDSDNKPEWIVMDV
IPVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLKKLVDLNAPEVIIRNEKRMLQQ
SVDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPTL
KLHQCGLPKKIALELYQPFIIRRLKELGHADTIKSAKKMLERKDEEVWDILEEVITNHPV
LLNRAPTLHRMGIQAFEPILVEGNAIRLHPLVCKGFNADFDGDQMAVHLPLSIEAQVEAH
TLMMSTHNIFSPANGQPIISPSQDVVMGCYYVTMDVPEAPGDGMAFGSFAEVEMAHAVGK
VHTHARIKVRLPKGRCLREEMDDPKKLGRVIDTTVGRVFFNEMLPQGMPFYNHSMRSGAL
SKVISDCYEFLGRRQTITLLDDMNQLGFKRATASGLSFGTDDLVTPDTKGKILAKAEKEV
LKRNKLYQRGIITEGERYNGVLDAWTHAREEITAEMMTALENDYRGNQYVNPIFLMAHSG
ARGGVEQMRQLGGMRGLMAKPSGKIIETPIKANFREGLTVLEYFSSTHGARKGLADTALK
TADSGYLTRKLADVAQNVVVTTDDCGTTQAITKGVLYRGEKVEVGLADIIKGRVSRQNIV
NPITDEVIIAENGMITADIARKIEALGLEKLQVRSPMTCRAALGVCRKCYGMDMSTGSMV
EEGMAVGIIAAQSIGEPGTQLTMRTFHIGGVGNRDVEQSDIKAAKGGIVRFAKLNAVKNE
EDNLVVLGRNGELALVDDRGREIEKYEVPTGAVIALEEGQTVKAGDVLCEWDPHSIPILA
EVGGKLRYEDLVEGETIRAEKDPSGQMRYIVMEHKGDLHPQLVIEDPKDGKVLDFYYMPE
KAHLVAREGDLIKAGAVIAKTPREAGGTQDITGGLPRVTEIFEARKPKDPAVIAEIDGTV
EILAEKKRGKRSIIVRNEAGIEREHLVSHNKHLRVHTGDIIKAGDSLVDGPLVPHDILMV
SGEEAVQQYLSREIQNVYRSQRVEINDKHIEIIVSQMLRKVKIDSPGDTDLLPGSVLDKY
DFRRANDRINECLKITDKGDSEFEVDAIVPKTVLEQANAQIEALGGELAKGAKPKKATAS
TQLLGITKASVQSSSFISAASFQETTKVLTEAALAGRTDHLVGLKENVILGHLIPAGTGF
RATNESEVRIRPEALEALSVETAGVMDRSFPLLDGGSQPRPAQDPAAPSSLDALLGGGGS
DE
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcttgaatcttccaactacgaccggatcaacgactacgcgtcggtgaagatc
agcctggcgcggccgcacgatatccgtagctggtcgttcggcgaggtcaagaagcccgag
acgatcaactatcggacgtaccggcctgagaaggacggtctgttctgcgagcggatcttc
ggcccggagaaggactgggagtgcgcctgcggcaagtaccgcggcatgaagtacaagggg
atgatctgtgaccgttgcggcgtgaaggtcacgcacagccgcgtgcggcgcaagcggatg
gggcacatcgagctggcggcgccgatcgtccacatctggttcttcaaggccatgccgagc
cgcctgggctcgctgttggcgatgaagaccacgagcctcgagaaggtcatctacttccag
gattacgtcgtcgtcgagccgggcgacacgccgctgaagcaccagcagctgctcaccgaa
gaagagtaccgcaccgcccgcgagcagtacggcgagggctcgtttgacgccgacatgggc
gccgaggcggtccgcaagctactcatgcagctcgacctggtgaagctgtcggagacgctc
cgtgaagagctcaagaccaccggcagcaagcagaaggcgaaggacctcatcaaccggctg
aagacggtcgagtcgatccgcgactcagacaacaagccggagtggatcgtcatggacgtg
atcccggtaatcccaccggacttgcgtccgctcgtgctgctcgattcgggtaacttcgcc
acgagcgacctgaacgacctctaccgccggattatcaaccgcaacaaccggctcaagaag
ctggtggacctcaacgcgcccgaggtcatcatccgcaacgagaagcggatgctgcagcag
tcggtcgacgcgctgttcgacaacaatcgttgcaagcggccggtgctcggcagctcgaac
cgcccgctcaagtccttgacggacatgatcaagggtaagcagggccggttccgtgagaac
ctgctcggcaagcgcgtcgattactcggcgcggagcgtgatcgtcgtcggcccgacgctg
aagttgcaccagtgcggcctgccgaagaagatcgcgctagagctgtaccagccgttcatc
atccgccggctcaaggagctcgggcacgccgacacgatcaagtcggcgaagaagatgctc
gagcgcaaagacgaagaggtgtgggacatcctcgaagaggtgatcaccaaccaccccgtg
ctgctcaaccgggcgccgacgctgcaccgcatgggcatccaggcgtttgagccgatcctg
gtggaaggcaacgccattcggttgcacccgctggtgtgtaagggtttcaacgccgacttc
gacggcgaccagatggcggtccacctgccgctgtcgatcgaggcgcaggtcgaagcgcac
acgctgatgatgtcgacgcacaacatcttcagccccgccaacggccagccgatcattagc
ccgtcgcaggacgtggtgatgggttgctactacgtcacgatggacgtgcccgaggcgccc
ggcgacgggatggcgttcggttcgttcgcggaggtcgagatggcgcacgcggtgggcaag
gtccacacgcacgcccggattaaggttcgcctgcctaagggccgctgcctccgcgaggag
atggacgacccgaagaagctcggccgcgtaatcgacacgaccgtgggccgcgtcttcttt
aacgagatgctcccgcaggggatgcccttctacaaccactcgatgcgttcgggcgcgttg
tcgaaggtgatcagcgactgctacgagttcctcggccgccgccagacgatcacgctgctg
gacgacatgaaccagctcgggttcaagcgcgccacggcgagcgggctctcgttcggcacc
gacgacctggtgacgcccgacacgaagggcaagatcctcgctaaggcggagaaggaagtc
ctcaagcggaacaagctctaccaacgcggcatcatcaccgagggcgagcgttacaacggc
gtcctcgacgcctggacgcacgcccgtgaagagatcacggccgagatgatgacggcgttg
gagaacgactaccgcggcaaccagtacgtcaacccgatcttcctgatggcgcactccggc
gcccgtggtggcgtcgagcagatgcgtcagctcggcggcatgcgtggcctgatggcgaag
ccgtccggcaagatcatcgagacgccgatcaaggcgaacttccgggaaggcctcacggtg
ctcgagtacttcagctcgacgcacggcgcccgcaagggtctggccgatacggcgctgaag
acggccgactcgggttacctgacgcgtaaactggcggacgtcgcccagaacgtcgttgtg
acgaccgatgactgcggcaccacgcaggcgatcaccaagggcgttctctaccgcggtgag
aaggtcgaggtcggtctggccgacatcatcaagggccgtgtcagccggcagaacatcgtc
aacccgatcacggacgaagtgatcatcgccgagaacgggatgatcaccgccgacatcgcc
cgcaagatcgaggccctgggcttggagaagctccaggtccgcagcccgatgacctgtcgg
gcggcgctgggcgtctgtcgcaagtgctacggcatggacatgtcgaccggctcgatggtc
gaagagggcatggccgttggcatcatcgccgcccagagtatcggcgagcccggcacgcag
ctgacgatgcggacgttccacatcggcggcgtgggtaaccgcgacgtcgagcagtcggac
atcaaggccgccaagggcggcatcgtccgcttcgccaagctcaacgcggtgaagaacgag
gaggacaacctcgttgttctcggccgcaacggcgagctcgcgctggtggacgaccgcggc
cgcgaaatcgagaagtacgaggtcccgaccggcgccgtgatcgcgttggaagagggtcag
acggtcaaggccggcgacgtgctttgcgagtgggacccgcactcgatcccgattctcgcc
gaggtcggcggcaagctccgctacgaggacctcgtcgagggcgagacgatccgcgccgag
aaggacccttcgggccagatgcggtacatcgtcatggagcacaagggcgacctgcacccg
cagttggtgatcgaagatccgaaggacggcaaggtcctcgacttctattacatgccggag
aaggcgcacctcgtggcccgcgaaggagacttgatcaaggcgggcgccgtcatcgccaag
acgccgcgtgaagcgggcggcacccaggacatcaccggcggcctgccccgcgtgacggag
atcttcgaagcccgcaagccgaaggaccctgccgtgatcgccgagatcgacggcacggtc
gagatcctcgccgagaagaaacgcggcaagcgttcgatcatcgtccgcaacgaagccggc
atcgagcgcgagcacctagtgtcgcacaacaagcacctccgggtgcacaccggcgacatc
atcaaggcgggcgactcgctggtcgatggaccgctggtgccgcacgacatcctgatggtc
tccggcgaagaggcggtgcagcagtacctgtcgcgggagattcagaacgtctaccgcagc
cagcgtgtcgagatcaacgacaagcacatcgagatcatcgtttcgcagatgctgcggaag
gtgaagatcgactcgccgggcgacacagacctgctgcctggttcggtgctcgacaagtac
gacttccgccgggcgaacgatcgcatcaacgagtgcctgaagatcaccgacaagggcgac
agcgagttcgaggtcgacgcgatcgttccgaagaccgtgctcgagcaggcgaacgcccag
atcgaggccctcggcggcgagctcgccaagggcgcgaagccgaagaaggcgaccgcctcg
acccagctcttgggcatcaccaaggcgtcggtccagagctcgtcgttcatctcggcggcg
agtttccaggagacgacgaaggtgctgaccgaggcggcgcttgccggccggaccgaccac
ctggttggtctcaaggagaatgtgatcctcgggcacttgatcccagcgggaacgggtttc
cgggccacgaacgagtcggaagtccgcatccgccccgaggccctcgaggccctctcggtc
gagacggcgggcgttatggaccgttcgttcccgctgctggatggcggctcgcagccacgc
cccgctcaggacccggccgccccgtcgagcctcgacgccctgctgggcggcggcggttcg
gacgagtga
DBGET
integrated database retrieval system
