Botrimarina mediterranea: Spa11_44770
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Entry
Spa11_44770 CDS
T09862
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bmei
Botrimarina mediterranea
Pathway
bmei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bmei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Spa11_44770 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bmei03021
]
Spa11_44770 (rpoB)
03400 DNA repair and recombination proteins [BR:
bmei03400
]
Spa11_44770 (rpoB)
Enzymes [BR:
bmei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Spa11_44770 (rpoB)
Transcription machinery [BR:
bmei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Spa11_44770 (rpoB)
DNA repair and recombination proteins [BR:
bmei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Spa11_44770 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QDV76252
UniProt:
A0A518KEQ0
LinkDB
All DBs
Position
complement(5651410..5655132)
Genome browser
AA seq
1240 aa
AA seq
DB search
MAVTAQRRLYTPEVRTFGSERTGYEVPDLTAIQTASYARFLQYDGSNPDKRKDEGLEAVL
REIFPIESYDKSISLDYVRYELGKPRYTPDECRQLRLTYGRPLRVWLRLNREQPIEEEVY
LGDLPVMMGGGEFIINGAERVVVSQLHRSPGIDFVSEIEAGDRKVYSCRVIPERGSWIEV
NTTKKDSITVRIDQSGKFSVVTLLRAMDSKMGLDSEILKAFYEVTKQKIVDGRSVVKIEG
KIAVEDIVYPVGSDRAGEIILEAGQRITKNTAEVICTSGVKAVEVMDPPPSPHLLNAMAD
DVTASHEEALLRIYQRLRPGNPPQLEKARTLFAEKFFDTNRYRLGRVGRFRMNRKLGIDV
PEDEMVLRAEDLVNAVKYVLGLASGSSETYVDDIDHLGNRRLRTIDELAADEMRKGFLKL
RRTVQERMSLKDAEDMTPRSLINPKSISAAIEYFFGRGELSQVVDQTNPLSMLTHERRLS
ALGPGGLNRKRAGFEVRDVHISHYGRICPIETPEGTNIGLISSLAMYASVDEYGFLVTPY
RKVKDGKLQDEVVWLRADEEHEAYVASADVPVKGGVIQGDMAGLIVARTRADFLLCPVDK
IQYIDVAPSQMIGVSAGLIPFLEHDDANRALMGSNMQRQAVPLLVAEPPIVGTGLENEVA
KHSGMLVRAGHKGTVTYADANRIEIGPEVHVLRKFVGLNERTCQNQKPIVKPGDKVEKGQ
VIADGAATWQGDLALGRNVLVAFMSFDGYNYEDAIILSEELVHKDTYTSIHIEEFDVEIR
ETKLGREEFTRDIPNVSEKMLRNLDEGGVVRIGTFVRPGDILVGKVSPKSKTELTPEEKL
LHAIFGRAGEDVKNDSLEVPSGVEGIVIDTQKFSRRMSLSEEERKEFERSLKTAEADGAA
KIAEAFTAMVAEIEGVLKKKLTDDDGNSIVHERDPKSVAEQAAIFRLDRLDVRSPERSKD
VEKIYKQMWPAVEEAIDARDRTLNSMKRGDELRSGVLQMVKVYIATKRVISVGDKMAGRH
GNKGVISKIMPVEDMPFLSDGTPVQIMLNPLGVPSRMNVGQILETHLGWAGSKLGFRSIT
PVFDGATEEEINDCLQEAGLPRHGKARLTDGRTGLPLEQETTVGYIYMLKLHHLVDDKVH
ARSTGPYSLITQQPLGGKARFGGQRFGEMEVWALEAYGAAYILQELLTVKSDDVEGRTKI
YESMVKGENTLEAGTPASFDVLTNEIRGLGLNMQLEKRGL
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggccgttaccgcccagcgccgcctctacacgcccgaagtccgcacgttcggcagcgag
cgtaccgggtacgaagtgcccgacctgacggcgatccaaaccgccagctacgcccgcttt
ctgcagtacgacgggtcgaatcccgacaagcggaaggacgagggcctcgaggcggtcttg
cgcgaaattttcccgatcgagagctacgacaagtcgatcagcctcgactacgtccgctac
gagctcggcaagccgcgctacacgcccgacgagtgccgtcagctgcgtctgacgtatggc
cggccgctacgggtgtggctgcgcctgaaccgcgagcaaccgatcgaggaagaagtctac
ctcggcgatctgccggtgatgatgggcggcggcgagttcatcatcaatggcgccgagcgt
gtcgtggtgagccagttgcaccgctcgccgggcatcgacttcgtctcggagatcgaggcc
ggcgaccgcaaggtctactcgtgccgcgtgatccccgagcgtggcagttggatcgaggtc
aacacgaccaagaaggacagcatcaccgtccgcatcgaccagagcggtaagttttcggtc
gtgacgctgttgcgggcgatggactcgaagatgggtctcgattcggagatcctcaaggcg
ttttacgaggtcaccaagcaaaagatcgtcgacggccgtagcgtcgtgaagatcgagggc
aagatcgccgtcgaggacatcgtctacccggtcggcagcgaccgtgcgggcgagatcatt
ctcgaggcaggccagcggatcaccaagaacacggccgaggtgatctgcacgtcgggcgtg
aaggcggtcgaggtgatggacccgccgccgtcgccgcacctgctcaatgcgatggccgac
gacgtcacggccagccacgaagaggcgctgctgcggatctaccaacggctccgcccgggc
aacccgccgcagctcgagaaggcacggacgctgttcgccgaaaagttcttcgacaccaac
cgttatcgattgggtcgcgtcggccggttccgcatgaaccgcaaactgggcatcgacgtc
cccgaggacgagatggtgctgcgggccgaggacttggtgaacgcggtgaagtacgtgctc
ggcctggcgtcgggcagctcggagacgtacgtcgatgacatcgatcacctcggcaatcgc
cgtctgcggacgatcgacgagttggccgctgacgagatgcggaagggcttcctcaagctc
cgtcgcaccgtccaagagcggatgagtctgaaggacgcggaggacatgaccccgcgcagc
ctgatcaaccccaagagcatctccgcggcgatcgagtacttctttggtcgtggcgagctg
tcgcaggtcgttgaccagacaaacccgttgtcgatgttgacgcacgagcgtcgtctctcg
gcgcttggcccgggcggtttgaatcgcaagcgcgccggcttcgaggtgcgtgacgtccac
atcagccactacggccgcatctgcccgatcgaaacgccggaaggcacgaacatcggtctg
atcagttcgttggcgatgtatgcgtcggtggatgagtacggcttcctggtgacgccctac
cgcaaggtgaaggacggcaagcttcaggacgaggtcgtttggctccgcgctgacgaggag
cacgaggcctacgtcgcttcggcagacgtccccgtgaaggggggcgttattcaaggcgac
atggccggcttgatcgtcgcccgtacgcgggcggactttttgctctgcccggtggacaag
atccagtacatcgacgtggcgccgagccagatgatcggcgtttcggcgggtctgatcccg
ttcctcgagcacgacgacgcgaaccgcgcgttgatgggttccaacatgcagcgccaggcg
gtgccgctgttggtggccgagccgccgatcgtcggcacggggctcgagaacgaggtggcg
aagcactcgggcatgctcgttcgcgccggccacaaggggacggtcacgtacgccgacgcc
aaccgcatcgagatcggccccgaggtccacgtgctgcgtaagttcgttggcctcaacgag
cggacctgccagaaccagaagccgatcgtcaagccgggcgacaaggtcgagaagggccag
gtgatcgccgacggcgccgccacctggcagggcgacctggcgttgggacgcaacgtgctc
gtcgcgttcatgtcgttcgacggctacaactacgaggacgcgatcatcctctcggaggag
ctcgtccacaaagacacgtacacctcgattcatattgaggagttcgacgtcgaaatccgt
gagacgaaactcggacgcgaagagttcacccgcgacatcccgaatgtcagcgagaagatg
ctccgcaacctcgatgagggtggcgtggtccgcatcggcacgttcgtgcggcccggcgac
atcctcgtcggcaaggtctcgccgaagtcgaagaccgagttgacgccggaagagaagctg
ctgcacgcgatcttcggtcgcgccggtgaggatgtgaagaacgactcgctcgaggtgccg
tcgggcgtcgagggcatcgtcatcgacacgcagaagttcagccgccggatgagcctctcc
gaagaagagcggaaggagttcgagcgttcgctgaagacggccgaggccgacggcgccgcg
aagatcgccgaggcgttcaccgcgatggtcgcggagatcgagggcgttcttaagaagaag
ctgaccgacgacgacggcaacagcatcgtccacgagcgggacccgaagagcgtcgccgag
caggcggccatcttccggctcgatcgcctggacgtccgcagccccgagcgttcgaaggat
gtcgagaagatctacaagcagatgtggccggcggtcgaagaagcgatcgacgcccgcgac
cgcaccctcaacagcatgaagcgcggcgacgagctgcggagcggcgtgttgcagatggtg
aaggtttacatcgccacgaagcgtgtgatctcggtcggcgacaagatggccgggcgtcac
ggcaacaagggtgtgatctcgaagatcatgcccgtcgaggacatgcccttcctgtcggac
ggcacgccggtgcagatcatgctgaacccgctgggcgttccgagccgtatgaacgtgggg
cagatcctcgagacgcacctcggctgggccggttcgaagctcggcttccgttcgatcacc
ccggtgttcgacggggccaccgaagaagagatcaacgactgtctgcaagaggcgggcttg
ccgcgtcacggcaaggcgcgtctgaccgacggtcgcacgggccttccgctcgagcaggag
acgacggttggctacatctacatgttgaagctgcaccacttggtcgacgacaaggtgcac
gcgcgcagcacggggccctactcgctcatcacgcagcagccgctcggcggcaaggcgcgg
ttcggcgggcagcggttcggcgagatggaagtgtgggccctggaggcgtatggcgcggcg
tacatcctgcaggagttgctcaccgtgaagtccgacgacgttgaaggccggacgaagatt
tacgagtcgatggtcaagggcgagaacaccctcgaagcgggcaccccggccagcttcgac
gtgctcacgaacgagatccgcggcctgggtctgaacatgcagcttgagaagcgtggactg
tag
DBGET
integrated database retrieval system
