Bacillus methanolicus: BMMGA3_00315
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Entry
BMMGA3_00315 CDS
T03209
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmet
Bacillus methanolicus
Pathway
bmet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BMMGA3_00315 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmet03400
]
BMMGA3_00315 (mfd)
Enzymes [BR:
bmet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BMMGA3_00315 (mfd)
DNA repair and recombination proteins [BR:
bmet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BMMGA3_00315 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
UB2H
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
AIE58582
UniProt:
I3EC39
LinkDB
All DBs
Position
61198..64728
Genome browser
AA seq
1176 aa
AA seq
DB search
MKGIINQFNKQDDIQSVISGLDAGLKEQLIAGLSGSARTVFLASVYQQTKKPILVVTHNL
LQAQKLYDDVAGMLGEKEVFLYPANELIMAEMSIASPELKAQRIETVNHWSKNQNGIVIV
PVAGLRKILPPKSLWEHYQLFIKLGDEIDLEQYLQKLIKMGYVRTDMVSSPGEFSLRGGI
IDIYPLTEPEPIRIELFDTQIDSIRSFSLEDQRSKEKLAEILIGPATENPLEPEHFDNII
NKLEDGLAKSLNKIKDDKSKALLLQNIGYELEQLKNGQKPEQVFKYLSFAYEKAGSLLDY
LPDNGLIFIDEISRVQEMNDSLEKEEAEWYTSLLSEGQIVHDIKISHQLHHLLQTTKRSI
LYLSLFLRHVPNTNPQNIINISCKQMQNFHGQMHVLKGEIDRWKKGHYSIVFLGPDRERV
KKLQKVLEDYEIDATVTGENQELLPGKVQIIEGSLNTGFEIPIQKIAVITEEELFNKKTK
RPARRQKLSNAEKIKSYSELRVGDYVVHVNHGIGKYLGIETLEINGVHKDYLHIRYQGND
KLYVPVEQIDLVQKYVGSEGKEPKIYKLGGSDWKRVKNKVKSSVQNIADDLIKLYAEREA
ARGYAFSPDGEMQREFEAAFPYQETEDQLRSIHEIKRDMERERPMDRLLCGDVGYGKTEV
ALRAAFKAIADGKQVAFLVPTTILAQQHYETMKERFQDYPIKIGLLSRFRTRKQQTETLK
GLKDGTIDIVVGTHRLLSKDVVFRDLGLLIIDEEQRFGVAHKEKIKQLKTNIDVLTLTAT
PIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEYNGGLVKEAIERELARGGQVYFLYN
RVEDIERKAEEISMLVPDARVVYAHGKMSENELESVMLTFIEGEADVLVSTTIIETGVDI
PNVNTLIVYDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGAEQHGFIDSVGFDLYSQMLKEAIEERKGNNEQPKRTQ
LEIDLEVDAYIPDSYIADGHQKIEMYKRFRAISSLDDIEELQEEMIDRFGEYPDEVAYLF
QIAEMKVYGQLAGVEIIKQTKNEVLILLSEEGSKDIDGQKIFQLSSKHGRVVGLGMEGKK
LKMVLHIKGIDIPMWMNIAFEMIQGLHDAKKDPVEQ
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggaattattaatcaatttaataaacaagatgatatacaatcggttatttccggt
ttggatgcaggcttaaaagagcagttgattgccggattatccgggtcggccagaacggtt
tttttagcttccgtctatcaacaaacaaaaaagccgattctggtcgtaacccataatcta
ttacaagcacaaaaactatatgatgatgtggccggcatgctcggagagaaagaagtgttt
ttatatcctgccaatgaactgattatggctgaaatgagtatagcaagccctgaattgaaa
gcccagcgtattgaaacggtgaatcattggagcaaaaaccaaaatggaattgtaattgtt
cctgttgccggactgcgaaaaattttgccgccaaaatctctctgggaacattatcagctt
tttataaaacttggagatgaaatagatttagaacaatatttgcagaagctcattaaaatg
ggttatgtgcgtacggacatggtttcatctccgggagaattcagcctgagaggcggtatt
atcgatatttatccattaacggagcctgagccgatccggattgaattatttgatacacaa
atcgattccattcgctctttttcactggaagatcagcgctccaaagaaaaactagcagaa
attttaattggccctgcaactgagaatccactggaaccggagcattttgataatattatt
aacaaacttgaagacggattagcaaaaagcttgaacaaaataaaagacgataaatcaaaa
gcattgcttttacaaaatatcggttacgagcttgaacagttaaaaaatgggcaaaaaccg
gagcaagtatttaaatatctatcatttgcctatgaaaaagccggtagtttactagactat
ttacctgacaacggactaatttttattgatgagataagcagagtacaagagatgaacgat
tctttagaaaaagaagaggctgaatggtatacaagtttattaagtgaagggcaaattgtt
catgatataaaaatttcacaccagctccatcatttacttcaaacaacgaaacggtcgatt
ctttatttgtctttattccttaggcacgttccaaatacaaatccgcaaaatataattaat
atttcatgcaaacaaatgcaaaatttccatggacaaatgcatgtgttgaagggtgaaatt
gatcgctggaaaaaaggccattattcaattgtttttctagggcctgatagagaacgagta
aaaaaacttcaaaaagtacttgaggattatgaaattgatgcaaccgttacaggcgagaac
caggaattattgccgggaaaagttcaaattattgagggaagcctgaatacaggatttgaa
attccgattcaaaaaatcgcagtcattaccgaggaagaactatttaataaaaaaacaaag
agaccggcgcgccgccagaaactttcaaacgcagaaaagatcaaaagctattccgaattg
cgagtcggggattatgttgtccatgttaaccatggaattgggaaatatttaggtattgaa
acacttgagattaacggtgtgcacaaagactatctccatatccgctatcaagggaacgat
aagctttatgttcctgttgaacaaattgatcttgtgcaaaaatatgttggctcagaggga
aaagagccaaaaatttataaacttggcggcagtgattggaaaagggtaaaaaacaaagtc
aaatcatccgtacaaaacattgcggatgatttgattaagctttatgcagaacgggaagcg
gccagaggatatgctttttccccggatggagagatgcaaagagaatttgaggctgccttt
ccttatcaagaaacggaagatcagcttcgttctatacatgaaattaaaagagatatggag
cgggaacgtccgatggatcggctgttgtgcggagatgttggttacggaaaaacagaggtt
gccctccgcgctgccttcaaagcgattgcagacggcaagcaagttgcgtttcttgttccg
acgacaatccttgcccagcagcattatgaaacaatgaaggaaagatttcaggattatcca
ataaagattgggttattaagccgtttccggacaagaaaacaacagaccgagacattaaaa
ggactaaaagatggaacgattgatatcgtagttgggactcaccgtcttctttcgaaagat
gtggttttccgggatttaggtttattgattatcgacgaagaacagcgatttggggttgcc
cacaaagaaaaaatcaagcaactgaaaacaaatatcgatgtattaacgttaacggcaaca
ccaattccaagaactcttcatatgtcgatgctaggggtgagggacctgtcggttattgag
acgccgcctgaaaatcgtttccctgtccaaacatatgtattggaatataatggcggtctt
gtcaaagaagcgattgaaagagagcttgcaagaggaggacaagtttatttcttatataac
cgggttgaagacattgagaggaaagcggaagaaatttcgatgcttgttcctgatgcaagg
gttgtatatgcccatgggaagatgtcggaaaatgaactagaatctgtgatgctcactttc
attgaaggggaagccgatgttcttgtcagcacaacaattattgaaaccggggtagacatc
ccgaatgttaatactctgatagtctatgatgctgataaaatgggtctttctcaactttat
caattgcggggccgggtaggaaggtccaaccgtgttgcgtatgcgtattttacctatcgg
aaagataaggtgttgacagaagtggcagaaaaacgtttgcaggccattaaagaatttacc
gaactaggatcaggatttaaaatcgcgatgcgtgatttatcaatccggggagcaggcaat
ttgcttggggcagagcaacatggatttatcgactctgttggatttgacctgtattcacaa
atgctgaaagaagcaattgaggaacgaaaaggtaacaatgaacagccaaagagaacccag
cttgagattgatttagaggttgatgcttatatccctgattcgtatatcgcggacggtcac
caaaaaatagaaatgtacaaacgattccgggctattagttcccttgatgatatagaagaa
cttcaggaagaaatgatcgacagatttggagaatatcctgatgaggttgcatatttgttc
caaattgctgagatgaaggtttacggccagcttgccggagtagaaataataaaacagacg
aaaaacgaagtgctgattttattgtcggaagaaggaagtaaggatatagacggccagaaa
attttccaactaagcagcaaacatggcagagttgtcggcttaggcatggaagggaaaaag
ctgaaaatggttcttcatattaaagggattgatattccaatgtggatgaatattgcattt
gagatgattcagggtttgcatgatgcgaaaaaagacccggttgaacaatag
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