Bacillus methanolicus: BMMGA3_05275
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Entry
BMMGA3_05275 CDS
T03209
Symbol
rnjA
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bmet
Bacillus methanolicus
Pathway
bmet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bmet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BMMGA3_05275 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bmet03019
]
BMMGA3_05275 (rnjA)
Messenger RNA biogenesis [BR:
bmet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BMMGA3_05275 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
AIE59485
UniProt:
I3DYT8
LinkDB
All DBs
Position
complement(1034020..1035687)
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AA seq
555 aa
AA seq
DB search
MKFVKNDQTAVFALGGLGEIGKNTYAVQFQDEIILIDAGIKFPEDELLGIDYVIPDYTYL
IKNEDKIKGLFVTHGHEDHIGGIPYLLREINIPIYGGKLALGLIKNKLEEHGLLRNAKLF
EIKEDDVIKFRKTSVTFFRTTHSIPDSYGIVVKTPPGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPNFTMSERRVGESIQDIFRKVDGRIIFATFASNIHRLQQ
VTEAAVMNGRKIAVFGRSMEAAIEIGRDLGYIRAPKDTFIDAQHINRLPANQVTILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTISVSRTINLLYRAGAEVIHGSL
NDIHTSGHGGQEEQKLMLRLMKPKFFMPIHGEYRMQKMHVKLAVDCGVPEENCFIMDNGE
VLALSQDEARVAGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVVVVVSINMKDFKI
AAGPDIISRGFVYMRESGDLINDAQTLITKHLNKVMERKTTLWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgtaaaaaatgatcaaactgccgtgtttgcccttggaggacttggggagatc
ggcaaaaatacgtatgcggttcagtttcaggatgaaatcatccttattgatgctgggatc
aagtttcctgaagacgaattactgggtatcgattacgtcatacctgactacacatacctt
attaagaacgaagacaaaattaaaggccttttcgttacacatggacacgaagaccatata
ggtggaattccatacctgctcagagaaataaatattccaatttacggcggaaaattggca
ttaggcttaataaaaaacaaactggaagaacatggacttcttagaaatgcaaagcttttt
gaaattaaagaagatgacgtcattaagttccgcaaaacttcggttacatttttccgaacg
acccacagcatacctgattcatacggaattgtcgttaaaacgcctccaggtcaaatcgtt
cacacaggcgattttaaatttgattttactccagttggcgaacctgctaatttaacaaaa
atggctgaaatcggtaaagagggagtcttgtgcttgctctctgacagtaccaatagtgaa
ataccaaatttcactatgtcagaacgtcgcgtcggagaaagcattcaagacatcttccga
aaagtagatggccgcatcatttttgcgacgtttgcatcaaacatccatcgtcttcaacaa
gtaacagaagcggctgtcatgaatggcaggaaaatcgctgtatttggacgaagcatggag
gcagcaattgagatcggcagagatttaggctatatccgtgcgcctaaagatacgtttatc
gatgcacagcacattaatcgacttcctgcgaaccaagtaactattctttgtacaggaagc
cagggagagccaatggctgccctttcacgaattgccaatggcacacaccgtcaaatacaa
attattccgggagatacagttgtcttctcttcttctccaatcccggggaatacgataagc
gttagcagaacaatcaaccttctttaccgagccggagcggaggttatccatggttcgtta
aatgacattcatacatcaggccatggtggacaagaagaacaaaaattaatgctgcgctta
atgaagcctaaattctttatgccgatccacggagaataccggatgcagaaaatgcatgta
aaactcgctgtggattgcggagtacctgaggaaaactgctttattatggacaacggtgaa
gttcttgctttaagccaagacgaagcaagagtagctggaaaaatcccttcaggttctgtg
tatattgacgggagcggtgtcggcgatataggaaatattgttttaagagatcgcagaatt
ttatctgaagaaggactggttgttgttgttgtcagcattaatatgaaagattttaaaatt
gctgccggtcctgatattatttcacgcggtttcgtctatatgagggagtcgggtgacctt
atcaatgatgcccaaacattaattacaaaacatcttaataaagtaatggaaagaaaaaca
acactatggtcagaaatcaagaatgaaattactgatacacttgcaccgttcctatatgaa
aaaacaaaacgtaggccaatgatcctgccgattattatggaagtttaa
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