Brucella abortus 2308: BAB2_0661
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Entry
BAB2_0661 CDS
T00304
Symbol
mfd
Name
(GenBank) DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site motif A (P-loop):Haem peroxidase:Transcription-repair coupli...
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bmf
Brucella abortus 2308
Pathway
bmf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bmf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BAB2_0661 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bmf03400
]
BAB2_0661 (mfd)
Enzymes [BR:
bmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BAB2_0661 (mfd)
DNA repair and recombination proteins [BR:
bmf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BAB2_0661 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
NitrOD2
Motif
Other DBs
NCBI-ProteinID:
CAJ12827
UniProt:
Q2YKJ8
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All DBs
Position
II:655922..659290
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AA seq
1122 aa
AA seq
DB search
MYIVRDGQRIADLEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCAL
KKAPHPAVILTTSNAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTVR
DIGEYAVRGGILDLYAPGAEEPLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMSEI
TLSSDMISRFRKNYVAMFGAPQRDDALYQAISEGRRFAGMEHWLPLFYDNLETVFDHAGP
MPVVFDHLVHEALTERHTMVVDHYEARLRQAEGKEAGSDAVPYKPVKPEMLYLTPGQVEE
AAEAAGLRIDLTPFGAPEVSGRTIIHADVHKGRSFAEERAATDVNLFEAVVKHIADLRAS
GKKVLVAAWTEGSLDRLCQVLDEHGLEKIETVDRLSTVKALSRDKVTAAVLAVESGFDAG
DLVVVAEQDILGDRLIRRSRRRKRDQDFISEVASLTAGDIVVHVDHGIGRFIGLKTITAA
GAPHDCLEIHYAGDDRLFLPVENIELLSRYGSEGSDAVLDKLGGGAWQARKAKLKKRLLE
IAGHLIQIAAERQMRGAPVMTPPDGLYAEFAARFPYDETDDQLTAIEAVADDLAQGKPMD
RLICGDVGFGKTEVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPINVAHA
SRLVGAKGLAATKKGLEEGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGVKHKERLK
ELKSDVHVLTLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLVIRETLL
RERYRGGQSFYVVPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYD
VLLSTTIVESGLDIPTANTMIVHRADMFGLAQLYQLRGRVGRSKQRAFALFTLPAGKMLT
QMAERRLKVLQSLDTLGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAV
ATLKGSGEVEDSQWSPQIAIGTAVMIPEAYVPDLQLRLGLYRRLADLEEPQDIDAFGAEL
IDRFGPMPDEVQHLLKIVYIKALCRRANVEKLDAGPKGVVIQFRHATFNNPVGLVKMIGE
QGSMAKIRPDQSIVFIRDWPTPEKRLNGSAVIMTQLAKIAAA
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgtatatcgtgcgcgacgggcagcgcattgccgatctggagcaggtgttgggtttcgtt
tcgcccgatctgccggtgctgcacctgcccgcctgggattgcctgccttatgaccgcgtg
tcgccaggggcggatgctgcagcgcgcagacttgcggcgctcagcgcgctttgcgcactg
aagaaagcaccgcatccagccgtcattctcaccacgtccaatgccgtgctgcaaaaattg
ccgccgcaggccgcacttggcgaacaggtgatctcagcgcgccccggcaaccagctcgac
atgaacgatcttgccgcacggctggagcgcaacggctttgagcgtgtctctaccgtgcgc
gacatcggcgaatatgcggtacgcggcggcattctcgatctttatgcgccgggagcggaa
gaaccgctgcggcttgattttttcggcgatacgctggaaacgatccgtgccttcgatccc
gcctcccagcgcaccaccggcacccgaaaggaattcgtgcttcagccgatgagcgaaatc
acgctctcgtccgacatgataagccggtttcgcaagaattatgtggccatgttcggcgcg
ccgcagcgtgacgatgcgctttatcaggccatcagcgaaggccgccgttttgctggcatg
gaacattggctgccgcttttctatgacaatctggagacagttttcgaccatgccgggcca
atgccggtcgtgttcgaccatctggtgcatgaggcgctgaccgagcgccacaccatggtt
gtggaccattacgaagcgcgactgcggcaggcggagggcaaagaggcgggcagcgatgcc
gtgccttacaagccggtaaagccggaaatgctctatcttacgccgggccaggttgaagaa
gccgccgaggccgctggcctgcgtattgaccttacgccattcggcgcgccggaggtttcc
ggccggaccattattcatgccgatgtgcacaagggccgcagctttgccgaggagcgcgcc
gcaaccgacgtgaacctgtttgaagccgtggtgaaacatattgcagacctgcgcgcctcc
ggcaaaaaggttctggttgccgcctggaccgaaggttcgctcgaccggctctgtcaggtt
ctggacgaacacgggcttgaaaaaatagagaccgtcgataggctttccaccgtcaaggcc
ctgtcgcgcgacaaggtgacggcggcggtgctggcggtcgaaagcggcttcgatgcgggc
gatctggtggtcgtggcggagcaggatattctgggcgacaggctcatccgccgctccagg
cgccgcaagcgcgatcaggatttcatctcggaagtcgcctcgctgacggctggcgatatc
gtcgtccatgtcgatcacggcattgggcgctttatcggcctcaagacgattactgcggca
ggcgccccgcatgactgccttgaaatccattatgcgggcgatgaccgcctgtttctgccg
gttgagaatatcgagcttctgtcgcgctatggctcggaagggtccgatgcggttctcgac
aagctgggcggtggcgcatggcaggcgcgcaaggcaaaactcaagaaacggcttctggaa
attgccggccatctgatccagattgccgccgaacgccagatgcgcggtgcgcctgtgatg
acgccgccggacggtctttatgcggaatttgccgcgcgctttccctatgatgagactgac
gaccagttgacggcaatcgaggccgtggcggatgatcttgcgcaaggcaagccgatggat
cgcctcatctgcggcgatgtcgggttcggcaagacggaagtggcgctgcgcgccgccttc
atcgccgcgatgagcggcgttcaggtggcagtggtcgtgccgaccacgcttctttcgcgc
cagcatttcaagaccttctccaaccgctttcacggcctgccgatcaatgtggcccacgcc
tcacgcctcgtcggcgcgaaggggctggccgccaccaaaaaggggctggaagagggaacg
gtcgatattgtcgtcggcacacacgcgcttttgggcagctccatcaagttcaagaatctc
ggccttctcattatcgatgaggagcagcatttcggtgtgaagcacaaggaacggctgaag
gaactgaaatccgacgtccatgtgctgaccctttcggccacgccgatcccgcgcaccctg
caacttgcgctgaccggcgtgcgtgaactttcgctcatcaccacgccgccggtggaccgc
atggcggtgcgcaccttcgtctcgccattcgatccgctcgtgatccgcgaaacccttttg
cgtgaacgctatcgcggcggccagagcttctatgtcgtcccacgcatagccgacctcacg
gatattgaagaattcctgaaggagcatgtgccggaactgaaagtggccgtggcccatggc
cagatggcgccgggtgtgctggatgacatcatgaatgccttctatgacgggcagtatgat
gtgcttctttccacaaccatcgtggaatcgggcctcgatattccaaccgccaacaccatg
atcgtgcatcgtgccgatatgttcgggctggcgcaactctatcagttgcgcggccgcgtg
ggccgctccaagcagcgcgctttcgcgctgttcacgctcccggcgggcaagatgctgacg
cagatggccgaacgccgtctgaaagtgctgcaatcgctcgacacgcttggcgcgggcttc
cagcttgcaagccacgacatggatattcgcggcgcaggcaatctgctgggcgaggaacag
tcgggccacatcaaggaagtgggcttcgagctttaccagcaaatgcttgaagaagcggtt
gcgacgctgaagggctccggcgaagtggaagacagccagtggtcgccgcagatcgccatt
ggtacggcggtcatgatcccggaagcctatgtgcccgacctgcaattgcgccttggcctt
tatcgccgtctggccgatctggaagagccgcaggatatcgatgcctttggtgcggaactc
atcgaccgtttcggcccgatgcccgacgaagtgcagcatcttctcaagatcgtctatatc
aaggcgctctgccgccgcgccaatgttgagaaactcgatgccgggccgaagggcgtggtt
atccagttccgccacgcgaccttcaacaatccggtcggtctggtaaaaatgatcggcgag
caggggtccatggcgaagatcaggccggaccagagcatcgtcttcatccgcgattggccg
acaccggaaaagcgcctcaacggctccgccgtcatcatgacacagcttgcaaagattgcg
gcggcctga
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